Download Causal Activity Models

GO-CAM download links

• GO-CAM JSON — one JSON file per GO-CAM, in the user-friendly GO-CAM JSON format
• DEPRECATED Pathway-like GO-CAMs as TTLs

About GO-CAM formats

• Available formats:
  • GO-CAM JSON, a user-friendly, LinkML-defined JSON serialization of GO-CAM models. This is the recommended format for most programmatic users; the schema is documented in the gocam-py documentation.
  • DEPRECATED RDF Turtle (TTL), a textual syntax for RDF called Turtle that allows an RDF graph to be completely written in a compact and natural text form, with abbreviations for common usage patterns and datatypes.

Notes:

• Individual TTLs (1 TTL for 1 GO-CAM) can also be retrieved from the GitHub repository noctua-models.

Programmatic access to GO-CAMs

As for any resource in GO, GO-CAMs are accessible through the DOI-versioned release stored in Zenodo.

GO-CAM models can also be retrieved individually, or by taxon or publication, through the GO API. For example, /api/gocam-model/{id} returns a single model in GO-CAM JSON format. See Programmatic Access to Gene Ontology for details.

Advanced users can work with GO-CAM models in Python using the gocam-py package, which also defines the GO-CAM LinkML schema.

Error or omission ?

Any errors or omissions in annotations should be reported by writing to the GO helpdesk.