Authoritative Database Groups

Authoritative Database Groups Where two or more databases are submitting data on the same species the GO Consortium encourages the model whereby one database group collects all annotation data for that species, removes the redundant (duplicate) annotations, and then submits the total dataset to the central repository. This ensures that no redundant annotations will appear in the master dataset. The table below documents those species for which a single database group is responsible for collating and submitting annotations. The format of the IDs used by these database groups can be found in the list of GO database abbreviations. For converting between different ID types, please see the tools for ID mapping on the GO wiki. More information on authoritative database groups and avoiding redundancy can be found in the GO annotation policies and guidelines.
GO Consortium groups responsible for all annotations for a species
Project name Species
Candida Genome Database
  • Candida albicans, taxon:5476
dictyBase
  • Dictyostelium , taxon:5782
  • Dictyostelium discoideum, taxon:44689
  • Dictyostelium discoideum AX2, taxon:366501
  • Dictyostelium discoideum AX4, taxon:352472
FlyBase
  • Drosophila melanogaster, taxon:7227 (fruit fly)
Leishmania major GeneDB
  • Leishmania major, taxon:5664
Plasmodium falciparum GeneDB
  • Plasmodium falciparum, taxon:5833 (malaria parasite P. falciparum)
Pombase
  • Schizosaccharomyces pombe, taxon:4896 (fission yeast)
Trypanosoma brucei GeneDB
  • Trypanosoma brucei TREU927, taxon:185431
Glossina morsitans GeneDB
  • Glossina morsitans morsitans, taxon:37546
goa_chicken, UniProtKB-GOA
  • Gallus gallus, taxon:9031 (chicken)
  • Gallus gallus bankiva, taxon:208525
  • Gallus gallus gallus, taxon:208526
  • Gallus gallus murghi, taxon:400035
  • Gallus gallus spadiceus, taxon:208524
goa_cow, UniProtKB-GOA
  • Bos taurus, taxon:9913 (cattle)
  • Bos taurus X Bison bison, taxon:297284 (beefalo)
  • Bos taurus x Bos indicus, taxon:30523
goa_human, UniProtKB-GOA
  • Homo sapiens, taxon:9606 (human)
gramene_oryza, Gramene
  • Oryza alta, taxon:52545
  • Oryza australiensis, taxon:4532
  • Oryza barthii, taxon:65489
  • Oryza brachyantha, taxon:4533
  • Oryza coarctata, taxon:77588
  • Oryza eichingeri, taxon:29689
  • Oryza glaberrima, taxon:4538 (African rice)
  • Oryza glumipatula, taxon:40148
  • Oryza grandiglumis, taxon:29690
  • Oryza granulata, taxon:110450
  • Oryza latifolia, taxon:4534
  • Oryza longiglumis, taxon:83309
  • Oryza longistaminata, taxon:4528
  • Oryza malampuzhaensis, taxon:127571
  • Oryza meridionalis, taxon:40149
  • Oryza meyeriana, taxon:83307
  • Oryza minuta, taxon:63629
  • Oryza nivara, taxon:4536
  • Oryza officinalis, taxon:4535
  • Oryza punctata, taxon:4537
  • Oryza rhizomatis, taxon:65491
  • Oryza ridleyi, taxon:83308
  • Oryza rufipogon, taxon:4529
  • Oryza sativa, taxon:4530 (rice)
  • Oryza sativa Indica Group, taxon:39946
  • Oryza sativa Japonica Group, taxon:39947
  • Oryza schlechteri, taxon:110451
  • Oryza sp. IRGC 105360, taxon:364100
  • Oryza sp. IRGC 81916, taxon:364099
  • Panicum , taxon:4539
Mouse Genome Informatics
  • Mus musculus, taxon:10090 (house mouse)
PAMGO_Atumefaciens
  • Agrobacterium tumefaciens str. C58, taxon:176299
Rat Genome Database
  • Rattus norvegicus, taxon:10116 (Norway rat)
Saccharomyces Genome Database
  • Saccharomyces cerevisiae, taxon:4932 (baker's yeast)
  • Saccharomyces cerevisiae RM11-1a, taxon:285006
  • Saccharomyces cerevisiae YJM789, taxon:307796
  • Saccharomyces cerevisiae var. diastaticus, taxon:41870
The Arabidopsis Information Resource
  • Arabidopsis thaliana, taxon:3702 (thale cress)
tigr_Aphagocytophilum
  • Anaplasma phagocytophilum HZ, taxon:212042
tigr_Banthracis
  • Bacillus anthracis str. Ames, taxon:198094
tigr_Cburnetii
  • Coxiella burnetii RSA 493, taxon:227377
tigr_Chydrogenoformans
  • Carboxydothermus hydrogenoformans Z-2901, taxon:246194
tigr_Cjejuni
  • Campylobacter jejuni RM1221, taxon:195099
tigr_Cperfringens
  • Clostridium perfringens ATCC 13124, taxon:195103
tigr_Cpsychrerythraea
  • Colwellia psychrerythraea 34H, taxon:167879
tigr_Dethenogenes
  • Dehalococcoides ethenogenes 195, taxon:243164
tigr_Echaffeensis
  • Ehrlichia chaffeensis str. Arkansas, taxon:205920
tigr_Gsulfurreducens
  • Geobacter sulfurreducens PCA, taxon:243231
tigr_Hneptunium
  • Hyphomonas neptunium ATCC 15444, taxon:228405
tigr_Lmonocytogenes
  • Listeria monocytogenes str. 4b F2365, taxon:265669
tigr_Mcapsulatus
  • Methylococcus capsulatus str. Bath, taxon:243233
tigr_Nsennetsu
  • Neorickettsia sennetsu str. Miyayama, taxon:222891
tigr_Pfluorescens
  • Pseudomonas fluorescens Pf-5, taxon:220664
tigr_Psyringae
  • Pseudomonas syringae pv. tomato str. DC3000, taxon:223283
tigr_Psyringae_phaseolicola
  • Pseudomonas syringae pv. phaseolicola 1448A, taxon:264730
tigr_Soneidensis
  • Shewanella oneidensis MR-1, taxon:211586
tigr_Spomeroyi
  • Silicibacter pomeroyi DSS-3, taxon:246200
tigr_Tbrucei_chr2
  • Trypanosoma brucei, taxon:5691
tigr_Vcholerae
  • Vibrio cholerae O1 biovar El tor, taxon:686
WormBase database of nematode biology
  • Caenorhabditis elegans, taxon:6239
Zebrafish Information Network
  • Danio rerio, taxon:7955 (zebrafish)