10:08:2005 09:30 gwg image autogenerated-by: DAG-Edit version 1.316 saved-by: ma11 date: Mon Feb 17 09:56:49 GMT 2003 version: $Revision: 1.1 $ Biological Imaging Methods CV This CV covers sample preparation, visualization and imaging methods. editor:Kathy Matthews (FlyBase) corrections and additions to matthewk@indiana.edu image This is an OWL translation of an ontology whose native representational form is .obo. The translation was performed using the oboInOwl xslt library. For details, see http://www.berkeleybop.org/obo-conv.cgi sample preparation methods image chemically fixed tissue image coagulating-fixative fixed tissue image acetone fixed tissue image acrolein fixed tissue image ethanol fixed tissue image methanol fixed tissue image crosslinking-fixative fixed tissue image ethelene glycol-bis-succinimidyl succinate fixed tissue EGS image formaldehyde fixed tissue image glutaraldehyde fixed tissue image osmium tetroxide fixed tissue image cryofixed tissue image unfixed tissue image embedded tissue image tissue in plastic embedment image tissue in acrylic resin embedment image tissue in epoxy resin embedment image tissue in wax embedment image tissue in paraffin embedment image tissue in polyester wax embedment image tissue in polyethylene glycol embedment image unembedded tissue image whole mounted tissue image living tissue image sectioned tissue image cryostat-sectioned tissue image hand-sectioned tissue image microtome-sectioned tissue image vibrotome-sectioned tissue image visualization methods image endogenous substrate, non-vital dye image diagram image HA peptide tag image endogenous substrate, cresyl fast violet image endogenous substrate, diaminobenzidine image endogenous substrate, eosin image endogenous substrate, ethidium bromide image endogenous substrate, fuchsin image endogenous substrate, giemsa image endogenous substrate, hematoxylin image endogenous substrate, methyl green image endogenous substrate, methyl violet image endogenous substrate, nitro blue tetrazolium chloride image endogenous substrate, nuclear fast red image endogenous substrate, orcein image endogenous substrate, propidium iodide PI image endogenous substrate, SYTOX Green image endogenous substrate, toluidine blue image endogenous substrate, vital dye image endogenous substrate, acridine orange AO image endogenous substrate, bisbenzimide H 33342 HO342 Hoechst 33342 image endogenous substrate, cationic colloidal gold image endogenous substrate, CMX rosamine Mitotracker X image endogenous substrate, 3,3'-dihexyloxacarbocyanine iodide DiOC image endogenous substrate, 4',6-diamidino-2-phenylindole DAPI image endogenous substrate, lucifer yellow image endogenous substrate, methylene blue image endogenous substrate, Nile blue A image endogenous substrate, Nile red image endogenous substrate, pyronine image endogenous substrate, rhodamine 123 image endogenous substrate, rhodamine B image endogenous substrate, SYTO Blue image endogenous substrate, SYTO Green image endogenous substrate, SYTO Orange image endogenous substrate, SYTO Red image endogenous substrate, YO-PRO-1 image endogenous substrate, dye conjugate image endogenous substrate, acidotropic-fluor conjugate LysoTracker image endogenous substrate, lectin-fluor conjugate image endogenous substrate, lectin-gold conjugate image endogenous substrate, paclitaxel-fluor conjugate image endogenous substrate, phalloidin-fluor conjugate image exogenous label image genetically encoded enzyme, exogenous substrate image beta-galactosidase, X-gal lacZ, X-gal image beta-glucuronidase, X-gluc GUS, X-gluc image genetically encoded tag image Aequorea victoria blue fluorescent protein tag BFP image Aequorea victoria cyan fluorescent protein tag CFP image Aequorea victoria green fluorescent protein tag GFP image Aequorea victoria red fluorescent protein tag RFP image Aequorea victoria yellow fluorescent protein tag YFP image Discosoma red fluorescent protein tag DsRed image c-MYC peptide tag image FLAG peptide tag image intracellular fill image fluor labeled RNA fill image 5-SFX fluorescein RNA fill image X-rhodamine RNA fill image fluor labeled protein fill image fluor conjugated actin fill image Alexa Fluor 488 actin fill image Alexa Fluor 568 actin fill image fluoresceine actin fill image rhodamine actin fill image fluor conjugated phalloidin fill image Alexa Fluor 350 phalloidin fill image Alexa Fluor 488 phalloidin fill image eosin phalloidin fill image fluoresceine phalloidin fill image Oregon Green 488 phalloidin fill image Oregon Green 514 phalloidin fill image rhodamine phalloidin fill image Texas Red-X phalloidin fill image fluor conjugated tubulin fill image Oregon Green 514 tubulin fill image X-rhodamine tubulin fill image lipophilic tracer fill image DiA lipophilic tracer fill image DiD lipophilic tracer fill image DiI lipophilic tracer fill image DiO lipophilic tracer fill image DiR lipophilic tracer fill image miscellaneous fill image biotin ethylenediamine fill Neurobiotin image cobalt fill image silver-intensified cobalt fill image metabolically incorporated radioisotope image [14]C labeled protein image [32]P labeled nucleic acid image [33]P labeled nucleic acid image [35]S labeled protein image [3]H labeled protein image probe-mediated label image labeled primary antibody image primary antibody-enzyme conjugate, substrate image primary antibody-alkaline phosphastase conjugate, BCIP image primary antibody-alkaline phosphastase conjugate, DAB image primary antibody-alkaline phosphastase conjugate, ELF 97 phosphate image primary antibody-alkaline phosphastase conjugate, Vector Black image primary antibody-alkaline phosphastase conjugate, Vector Blue image primary antibody-alkaline phosphastase conjugate, Vector Red image primary antibody-horseradish peroxidase, 3,3'-diaminobenzidine image primary antibody-horseradish peroxidase, 4-chloro-1-naphthol image primary antibody-horseradish peroxidase, 3-amino-9-ethylcarbazole image primary antibody-horseradish peroxidase, 3,3',5,5'-tetramethylbenzidine image primary antibody-horseradish peroxidase, Vector NovaRed image primary antibody-horseradish peroxidase, Vector SG image primary antibody-horseradish peroxidase, Vector VIP image primary antibody-fluor conjugate image primary antibody-aminomethylcoumarin acetate AMCA image primary antibody-Cascade blue image primary antibody-cyanine Cy2 image primary antibody-fluorescein isothiocyanate FITC image primary antibody-indocarbocyanine Cy3 image primary antibody-indodicarbocyanine Cy5 image primary antibody-rhodamine red-X RRX image primary antibody-tetramethyl rhodamine isothiocyanate TRITC image primary antibody-Texas Red TR image primary antibody-gold conjugate image labeled secondary antibody image secondary antibody-enzyme conjugate, substrate image secondary antibody-acid phosphatase, ELF 97 phosphate image secondary antibody-alkaline phosphastase conjugate, DAB image secondary antibody-alkaline phosphastase conjugate, ELF 97 phosphate image secondary antibody-alkaline phosphastase conjugate, Fast Blue B image secondary antibody-alkaline phosphastase conjugate, Fast Red image secondary antibody-alkaline phosphastase conjugate, INT image secondary antibody-alkaline phosphastase conjugate, Magenta Phos image secondary antibody-alkaline phosphastase conjugate, NABP image secondary antibody-alkaline phosphastase conjugate, NAGP image secondary antibody-alkaline phosphastase conjugate, NAMP image secondary antibody-alkaline phosphastase conjugate, NATP image secondary antibody-alkaline phosphastase conjugate, NBT image secondary antibody-alkaline phosphastase conjugate, Vector Black image secondary antibody-alkaline phosphastase conjugate, Vector Blue image secondary antibody-alkaline phosphastase conjugate, Vector Red image secondary antibody-alkaline phosphastase conjugate, BCIP image secondary antibody-beta-galactosidase, X-Gal image secondary antibody-beta-glucuronidase, X-gluc image secondary antibody-esterase, fluorescein diacetate image secondary antibody-esterase, Naphthol-AS-D-chloroacetate image secondary antibody-glucose oxidase, NBT image secondary antibody-glucose oxidase, TNBT image secondary antibody-horseradish peroxidase, 3,3'-diaminobenzidine image secondary antibody-horseradish peroxidase, 3,3'-diaminobenzidine silver enhanced image secondary antibody-horseradish peroxidase, 4-chloro-1-naphthol image secondary antibody-horseradish peroxidase, 3-amino-9-ethylcarbazole image secondary antibody-horseradish peroxidase, 3,3',5,5'-tetramethylbenzidine image secondary antibody-horseradish peroxidase, Vector NovaRed image secondary antibody-horseradish peroxidase, Vector SG image secondary antibody-horseradish peroxidase, Vector VIP image secondary antibody-phosphatase, Naphthol-AS-BI-phosphate image secondary antibody-fluor conjugate image secondary antibody-Alexa Fluor conjugate image secondary antibody-aminomethylcoumarin acetate conjugate AMCA image secondary antibody-Cascade blue conjugate image secondary antibody-cyanine conjugate Cy2 image secondary antibody-diaminotriazinylaminoflorescein conjugate DTAF image secondary antibody-fluorescein isothiocyanate conjugate FITC image secondary antibody-indocarbocyanine conjugate Cy3 image secondary antibody-indodicarbocyanine conjugate Cy5 image secondary antibody-lissamine rhodamine sulfonyl chloride LSRC image secondary antibody-rhodamine red-X conjugate RRX image secondary antibody-tetramethyl rhodamine isothiocyanate conjugate TRITC image secondary antibody-Texas red conjugate TR image secondary antibody-gold conjugate image labeled nucleic acid probe image labeled DNA probe image biotin labeled DNA probe image digoxigenin labeled DNA probe image fluor labeled DNA probe image BODIPY TR-14-dUTP labeled DNA probe image bromodeoxyuridine labeled DNA probe image fluoresceine-12-dUTP labeled DNA probe image Oregon Green 488-5-dUTP labeled DNA probe image radioisotope labeled DNA probe image [32]P labeled DNA probe image [33]P labeled DNA probe image labeled RNA probe image biotin labeled RNA probe image digoxigenin labeled RNA probe image fluoroscein labeled RNA probe image radioisotope labeled RNA probe image [32]P labeled RNA probe image [33]P labeled RNA probe image imaging methods (original image) image graphic illustration image computer graphic image black and white graphic image color graphic image grey scale graphic image camera lucida assisted graphic image free hand graphic image line art graphic image charcoal pencil graphic image colored pencil graphic image graphite pencil graphic image pen and ink graphic black and white graphic image painted graphic image acrylic painted graphic image oil painted graphic image pastel painted graphic image watercolor painted graphic image macroscopic photograph image microscopic photograph image wide field light micrograph image bright-field imaged micrograph image dark-field imaged micrograph image differential interference contrast imaged micrograph DIC Nomarski image fluorescence imaged micrograph image phase contrast imaged micrograph image polarized imaged micrograph image time lapse video recording image narrow field light micrograph image confocal micrograph image laser scanning confocal micrograph image spinning disk confocal micrograph image two-photon laser scanning micrograph image multi-photon laser scanning micrograph image electron micrograph image scanning electron micrograph image transmission electron micrograph image atomic force micrograph image X-ray micrograph image montage image Biological Imaging Methods image Is a image