Compare GO annotations for CLN3 and its Reference Genomes orthologs

Compare GO annotations for CLN3 and its orthologs

A summary/comparison table of the GOSlim categories is provided below.
A table of the annotations represented in this image is provided below.

Annotations are indicated by colored nodes: human, mouse, rat, worm, fly, dicty, chicken, zfin, tair, yeast, pombe, ecoli.
Green arrows indicate "is_a"; Purple arrows indicate "part_of"
GO annotations: Mouse from MGI; Human from GOA; Rat from RGD; Chicken from GOA; Fly from Flybase; Worm from Wormbase; Dicty from Dictybase; Yeast from SGD; Zfin from Zfin; Tair from TAIR; Pombe from Sanger; Ecoli from EcoliWiki (coming soon).
Organisms with experimental annotations are indicated: IDA, IEP, IGI, IMP, IPI. In addition, ISS annotations are so indicated.
Does not include evidence codes: IC, IEA, IGC, NAS, ND, NR, RCA, TAS.
Graph is also available as SVG (requires viewer plug-in from Adobe)
Evidence codes are listed at the bottom of the page.
Graph generated Tue Sep 4 17:30:56 2007.

Compare annotations to generic GOSlim branches

Category	ID	Term	Human	Mouse	Rat	Worm	Fly	Dicty	Chicken	Zfin	Tair	Yeast	Pombe	Ecoli
Molecular Function	GO:0005488	binding	X	(Mouse)	(Rat)	X	X	X	X	X	X	X	X	X
Molecular Function	GO:0003674	molecular_function	X	(Mouse)	(Rat)	X	X	X	X	X	X	X	X	X
Molecular Function	GO:0005515	protein binding	X	Mouse	Rat	X	X	X	X	X	X	X	X	X
Cellular Component	GO:0005623	cell	(Human)	(Mouse)	(Rat)	X	X	(Dicty)	X	X	X	(Yeast)	(Pombe)	X
Cellular Component	GO:0005575	cellular_component	(Human)	(Mouse)	(Rat)	X	X	(Dicty)	X	X	X	(Yeast)	(Pombe)	X
Cellular Component	GO:0005737	cytoplasm	Human	(Mouse)	Rat	X	X	X	X	X	X	(Yeast)	(Pombe)	X
Cellular Component	GO:0016023	cytoplasmic membrane-bound vesicle	(Human)	X	(Rat)	X	X	X	X	X	X	X	X	X
Cellular Component	GO:0005783	endoplasmic reticulum	Human	X	Rat	X	X	X	X	X	X	X	Pombe	X
Cellular Component	GO:0005768	endosome	(Human)	(Mouse)	Rat	X	X	X	X	X	X	X	X	X
Cellular Component	GO:0005794	Golgi apparatus	Human	X	Rat	X	X	X	X	X	X	X	X	X
Cellular Component	GO:0005622	intracellular	(Human)	(Mouse)	(Rat)	X	X	X	X	X	X	(Yeast)	(Pombe)	X
Cellular Component	GO:0005764	lysosome	Human	Mouse	Rat	X	X	X	X	X	X	X	X	X
Cellular Component	GO:0005634	nucleus	Human	X	Rat	X	X	X	X	X	X	X	X	X
Cellular Component	GO:0043226	organelle	(Human)	(Mouse)	(Rat)	X	X	X	X	X	X	(Yeast)	(Pombe)	X
Cellular Component	GO:0005886	plasma membrane	Human	X	Rat	X	X	X	X	X	X	X	X	X
Cellular Component	GO:0005773	vacuole	(Human)	(Mouse)	(Rat)	X	X	X	X	X	X	(Yeast)	(Pombe)	X
Biological Process	GO:0006519	amino acid and derivative metabolic process	X	(Mouse)	X	X	X	X	X	X	X	X	X	X
Biological Process	GO:0007610	behavior	X	(Mouse)	X	(Worm)	X	X	X	X	X	X	X	X
Biological Process	GO:0008150	biological_process	(Human)	(Mouse)	(Rat)	(Worm)	X	X	X	X	X	(Yeast)	(Pombe)	X
Biological Process	GO:0007154	cell communication	X	(Mouse)	X	X	X	X	X	X	X	X	X	X
Biological Process	GO:0008219	cell death	(Human)	(Mouse)	(Rat)	X	X	X	X	X	X	X	X	X
Biological Process	GO:0030154	cell differentiation	(Human)	(Mouse)	(Rat)	X	X	X	X	X	X	X	X	X
Biological Process	GO:0007267	cell-cell signaling	X	(Mouse)	X	X	X	X	X	X	X	X	X	X
Biological Process	GO:0016043	cellular component organization and biogenesis	(Human)	(Mouse)	(Rat)	X	X	X	X	X	X	X	(Pombe)	X
Biological Process	GO:0019725	cellular homeostasis	(Human)	(Mouse)	(Rat)	X	X	X	X	X	X	(Yeast)	(Pombe)	X
Biological Process	GO:0016265	death	(Human)	(Mouse)	(Rat)	X	X	X	X	X	X	X	X	X
Biological Process	GO:0009790	embryonic development	X	X	X	(Worm)	X	X	X	X	X	X	X	X
Biological Process	GO:0006629	lipid metabolic process	(Human)	X	(Rat)	X	X	X	X	X	X	X	X	X
Biological Process	GO:0008152	metabolic process	(Human)	(Mouse)	(Rat)	X	X	X	X	X	X	X	X	X
Biological Process	GO:0007275	multicellular organismal development	X	X	X	(Worm)	X	X	X	X	X	X	X	X
Biological Process	GO:0006996	organelle organization and biogenesis	(Human)	(Mouse)	(Rat)	X	X	X	X	X	X	X	(Pombe)	X
Biological Process	GO:0044238	primary metabolic process	(Human)	(Mouse)	(Rat)	X	X	X	X	X	X	X	X	X
Biological Process	GO:0019538	protein metabolic process	(Human)	(Mouse)	(Rat)	X	X	X	X	X	X	X	X	X
Biological Process	GO:0006464	protein modification process	X	(Mouse)	X	X	X	X	X	X	X	X	X	X
Biological Process	GO:0050789	regulation of biological process	(Human)	(Mouse)	(Rat)	(Worm)	X	X	X	X	X	X	X	X
Biological Process	GO:0000003	reproduction	X	X	X	(Worm)	X	X	X	X	X	X	X	X
Biological Process	GO:0007165	signal transduction	X	(Mouse)	X	X	X	X	X	X	X	X	X	X
Biological Process	GO:0006810	transport	(Human)	(Mouse)	(Rat)	X	X	X	X	X	X	(Yeast)	(Pombe)	X

Full set of experimental (and ISS) annotations

Category	ID	Term	DB Object	Evidence	Organism	Reference
Molecular Function	GO:0048306	calcium-dependent protein binding	Cln3	IPI	Mouse	MGI:MGI:3697749\|PMID:17189291
Molecular Function	GO:0005515	protein binding	Cln3	IPI	Mouse	MGI:MGI:3697749\|PMID:17189291
Molecular Function	GO:0005515	protein binding	Cln3	ISS	Rat	RGD:1600115
Cellular Component	GO:0005776	autophagic vacuole	Cln3	IDA	Mouse	MGI:MGI:3690270\|PMID:16714284
Cellular Component	GO:0005901	caveola	CLN3_HUMAN	IDA	Human	PMID:15240864
Cellular Component	GO:0005901	caveola	Cln3	ISS	Rat	RGD:1598669\|PMID:15240864
Cellular Component	GO:0005901	caveola	Cln3	ISS	Rat	RGD:1600115
Cellular Component	GO:0005737	cytoplasm	CLN3_HUMAN	IDA	Human	PMID:10191116
Cellular Component	GO:0005737	cytoplasm	Cln3	ISS	Rat	RGD:1600115
Cellular Component	GO:0044433	cytoplasmic vesicle part	Cln3	IDA	Mouse	MGI:MGI:3697749\|PMID:17189291
Cellular Component	GO:0005769	early endosome	CLN3_HUMAN	IDA	Human	PMID:15240864
Cellular Component	GO:0005769	early endosome	Cln3	IDA	Mouse	MGI:MGI:3527911\|PMID:15588329
Cellular Component	GO:0005769	early endosome	Cln3	ISS	Rat	RGD:1600115
Cellular Component	GO:0005783	endoplasmic reticulum	CLN3_HUMAN	IDA	Human	PMID:10191111
Cellular Component	GO:0005783	endoplasmic reticulum	Cln3	ISS	Rat	RGD:1600115
Cellular Component	GO:0005783	endoplasmic reticulum	btn1	IDA	Pombe	PMID:16823372
Cellular Component	GO:0005768	endosome	Cln3	ISS	Rat	RGD:1598669\|PMID:15240864
Cellular Component	GO:0005794	Golgi apparatus	CLN3_HUMAN	IDA	Human	PMID:15240864
Cellular Component	GO:0005794	Golgi apparatus	Cln3	ISS	Rat	RGD:1598669\|PMID:15240864
Cellular Component	GO:0005794	Golgi apparatus	Cln3	ISS	Rat	RGD:1600115
Cellular Component	GO:0000139	Golgi membrane	CLN3_HUMAN	IDA	Human	PMID:10191111
Cellular Component	GO:0000139	Golgi membrane	CLN3_HUMAN	IDA	Human	PMID:9949212
Cellular Component	GO:0000139	Golgi membrane	Cln3	ISS	Rat	RGD:1600115
Cellular Component	GO:0005795	Golgi stack	CLN3_HUMAN	IDA	Human	PMID:15240864
Cellular Component	GO:0005795	Golgi stack	Cln3	ISS	Rat	RGD:1600115
Cellular Component	GO:0030176	integral to endoplasmic reticulum membrane	CLN3_HUMAN	IDA	Human	PMID:12706816
Cellular Component	GO:0030176	integral to endoplasmic reticulum membrane	Cln3	ISS	Rat	RGD:1600115
Cellular Component	GO:0016021	integral to membrane	CLN3_HUMAN	IDA	Human	PMID:10191112
Cellular Component	GO:0016021	integral to membrane	Cln3	ISS	Rat	RGD:1580654
Cellular Component	GO:0016021	integral to membrane	Cln3	ISS	Rat	RGD:1600115
Cellular Component	GO:0016021	integral to membrane	cln3	ISS	Dicty	DDB_REF:10155
Cellular Component	GO:0005770	late endosome	Cln3	IDA	Mouse	MGI:MGI:3527911\|PMID:15588329
Cellular Component	GO:0045121	lipid raft	CLN3_HUMAN	IDA	Human	PMID:15240864
Cellular Component	GO:0045121	lipid raft	Cln3	ISS	Rat	RGD:1598669\|PMID:15240864
Cellular Component	GO:0045121	lipid raft	Cln3	ISS	Rat	RGD:1600115
Cellular Component	GO:0005764	lysosome	CLN3_HUMAN	IDA	Human	PMID:10924275
Cellular Component	GO:0005764	lysosome	CLN3_HUMAN	IDA	Human	PMID:9384607
Cellular Component	GO:0005764	lysosome	Cln3	IDA	Mouse	MGI:MGI:3690270\|PMID:16714284
Cellular Component	GO:0005764	lysosome	Cln3	IDA	Mouse	MGI:MGI:3527911\|PMID:15588329
Cellular Component	GO:0005764	lysosome	Cln3	ISS	Rat	RGD:1549688\|PMID:14622109
Cellular Component	GO:0005764	lysosome	Cln3	ISS	Rat	RGD:1600115
Cellular Component	GO:0005624	membrane fraction	CLN3_HUMAN	IDA	Human	PMID:12134079
Cellular Component	GO:0005624	membrane fraction	Cln3	ISS	Rat	RGD:1600115
Cellular Component	GO:0000329	membrane of vacuole with cell cycle-correlated morphology	btn1	IDA	Pombe	PMID:16291725
Cellular Component	GO:0043005	neuron projection	CLN3_HUMAN	IDA	Human	PMID:10332042
Cellular Component	GO:0043005	neuron projection	Cln3	ISS	Rat	RGD:1600115
Cellular Component	GO:0005634	nucleus	CLN3_HUMAN	IDA	Human	PMID:10191116
Cellular Component	GO:0005634	nucleus	Cln3	ISS	Rat	RGD:1600115
Cellular Component	GO:0005886	plasma membrane	CLN3_HUMAN	IDA	Human	PMID:15240864
Cellular Component	GO:0005886	plasma membrane	CLN3_HUMAN	IDA	Human	PMID:10191116
Cellular Component	GO:0005886	plasma membrane	Cln3	ISS	Rat	RGD:1598669\|PMID:15240864
Cellular Component	GO:0005886	plasma membrane	Cln3	ISS	Rat	RGD:1600115
Cellular Component	GO:0008021	synaptic vesicle	CLN3_HUMAN	IDA	Human	PMID:11590129
Cellular Component	GO:0008021	synaptic vesicle	CLN3_HUMAN	IDA	Human	PMID:10332042
Cellular Component	GO:0008021	synaptic vesicle	Cln3	ISS	Rat	RGD:1600115
Cellular Component	GO:0005802	trans-Golgi network	CLN3_HUMAN	IDA	Human	PMID:15240864
Cellular Component	GO:0005802	trans-Golgi network	Cln3	ISS	Rat	RGD:1600115
Cellular Component	GO:0000324	vacuole, cell cycle-correlated morphology	YHC3	IDA	Yeast	SGD_REF:S000046600\|PMID:9753630
Cellular Component	GO:0000324	vacuole, cell cycle-correlated morphology	YHC3	IDA	Yeast	SGD_REF:S000043786\|PMID:10319861
Cellular Component	GO:0000324	vacuole, cell cycle-correlated morphology	btn1	ISS	Pombe	GOC:unpublished
Biological Process	GO:0006520	amino acid metabolic process	Cln3	IMP	Mouse	MGI:MGI:3616748\|PMID:12763292
Biological Process	GO:0006865	amino acid transport	Cln3	IMP	Mouse	MGI:MGI:3653287\|PMID:16412658
Biological Process	GO:0042987	amyloid precursor protein catabolic process	CLN3_HUMAN	IDA	Human	PMID:10924275
Biological Process	GO:0042987	amyloid precursor protein catabolic process	Cln3	ISS	Rat	RGD:1600115
Biological Process	GO:0015809	arginine transport	CLN3_HUMAN	IDA	Human	PMID:16251196
Biological Process	GO:0015809	arginine transport	Cln3	ISS	Rat	RGD:1600115
Biological Process	GO:0015809	arginine transport	YHC3	IMP	Yeast	SGD_REF:S000075209\|PMID:14660799
Biological Process	GO:0015809	arginine transport	YHC3	IGI	Yeast	SGD_REF:S000075209\|PMID:14660799
Biological Process	GO:0008306	associative learning	Cln3	IMP	Mouse	MGI:MGI:3580037\|PMID:15885820
Biological Process	GO:0000046	autophagic vacuole fusion	Cln3	IMP	Mouse	MGI:MGI:3690270\|PMID:16714284
Biological Process	GO:0000917	barrier septum formation	btn1	IMP	Pombe	PMID:16291725
Biological Process	GO:0015802	basic amino acid transport	YHC3	IMP	Yeast	SGD_REF:S000075209\|PMID:14660799
Biological Process	GO:0015802	basic amino acid transport	btn1	ISS	Pombe	GOC:unpublished
Biological Process	GO:0051480	cytosolic calcium ion homeostasis	Cln3	IDA	Mouse	MGI:MGI:3697749\|PMID:17189291
Biological Process	GO:0008340	determination of adult life span	cln-3.1	IMP	Worm	WB:WBPaper00027030\|PMID:16435200
Biological Process	GO:0008340	determination of adult life span	cln-3.1	IGI	Worm	WB:WBPaper00027030\|PMID:16435200
Biological Process	GO:0008340	determination of adult life span	cln-3.2	IGI	Worm	WB:WBPaper00027030\|PMID:16435200
Biological Process	GO:0008340	determination of adult life span	cln-3.3	IGI	Worm	WB:WBPaper00027030\|PMID:16435200
Biological Process	GO:0009792	embryonic development ending in birth or egg hatching	cln-3.2	IMP	Worm	WB:WBPaper00005599\|PMID:12445391
Biological Process	GO:0006681	galactosylceramide metabolic process	CLN3_HUMAN	IMP	Human	PMID:15240864
Biological Process	GO:0006681	galactosylceramide metabolic process	Cln3	ISS	Rat	RGD:1600115
Biological Process	GO:0001575	globoside metabolic process	CLN3_HUMAN	IMP	Human	PMID:15240864
Biological Process	GO:0001575	globoside metabolic process	Cln3	ISS	Rat	RGD:1600115
Biological Process	GO:0006678	glucosylceramide metabolic process	CLN3_HUMAN	IMP	Human	PMID:15240864
Biological Process	GO:0006678	glucosylceramide metabolic process	Cln3	ISS	Rat	RGD:1600115
Biological Process	GO:0035235	ionotropic glutamate receptor signaling pathway	Cln3	IMP	Mouse	MGI:MGI:3653554\|PMID:16483786
Biological Process	GO:0045324	late endosome to vacuole transport	btn1	IMP	Pombe	PMID:16291725
Biological Process	GO:0007042	lysosomal lumen acidification	CLN3_HUMAN	IMP	Human	PMID:11722572
Biological Process	GO:0007042	lysosomal lumen acidification	Cln3	ISS	Rat	RGD:1600115
Biological Process	GO:0007040	lysosome organization and biogenesis	Cln3	IMP	Mouse	MGI:MGI:1337525\|PMID:10191119
Biological Process	GO:0007040	lysosome organization and biogenesis	Cln3	IMP	Mouse	MGI:MGI:1343910\|PMID:10440905
Biological Process	GO:0007040	lysosome organization and biogenesis	Cln3	IMP	Mouse	MGI:MGI:1346962\|PMID:10527801
Biological Process	GO:0007040	lysosome organization and biogenesis	Cln3	IMP	Mouse	MGI:MGI:3527911\|PMID:15588329
Biological Process	GO:0016236	macroautophagy	Cln3	IMP	Mouse	MGI:MGI:3690270\|PMID:16714284
Biological Process	GO:0016044	membrane organization and biogenesis	Cln3	IMP	Mouse	MGI:MGI:3527911\|PMID:15588329
Biological Process	GO:0043066	negative regulation of apoptosis	CLN3_HUMAN	IMP	Human	PMID:15240864
Biological Process	GO:0043066	negative regulation of apoptosis	Cln3	ISS	Rat	RGD:1600115
Biological Process	GO:0016242	negative regulation of macroautophagy	Cln3	IMP	Mouse	MGI:MGI:3690270\|PMID:16714284
Biological Process	GO:0043524	negative regulation of neuron apoptosis	Cln3	IDA	Mouse	MGI:MGI:3697749\|PMID:17189291
Biological Process	GO:0045861	negative regulation of proteolysis	Cln3	IMP	Mouse	MGI:MGI:1346962\|PMID:10527801
Biological Process	GO:0042133	neurotransmitter metabolic process	Cln3	IMP	Mouse	MGI:MGI:3616353\|PMID:16239221
Biological Process	GO:0016485	protein processing	Cln3	IMP	Mouse	MGI:MGI:3527911\|PMID:15588329
Biological Process	GO:0006898	receptor-mediated endocytosis	CLN3_HUMAN	IMP	Human	PMID:15471887
Biological Process	GO:0006898	receptor-mediated endocytosis	Cln3	ISS	Rat	RGD:1600115
Biological Process	GO:0001508	regulation of action potential	Cln3	IMP	Mouse	MGI:MGI:3653287\|PMID:16412658
Biological Process	GO:0050885	regulation of balance	Cln3	IMP	Mouse	MGI:MGI:3653554\|PMID:16483786
Biological Process	GO:0051453	regulation of cellular pH	CLN3_HUMAN	IDA	Human	PMID:10924275
Biological Process	GO:0051453	regulation of cellular pH	Cln3	ISS	Rat	RGD:1600115
Biological Process	GO:0051453	regulation of cellular pH	YHC3	IMP	Yeast	SGD_REF:S000043786\|PMID:10319861
Biological Process	GO:0051453	regulation of cellular pH	YHC3	IMP	Yeast	SGD_REF:S000114207\|PMID:16423829
Biological Process	GO:0051453	regulation of cellular pH	YHC3	IMP	Yeast	SGD_REF:S000041784\|PMID:10191121
Biological Process	GO:0046662	regulation of oviposition	cln-3.2	IMP	Worm	WB:WBPaper00027030\|PMID:16435200
Biological Process	GO:0046662	regulation of oviposition	cln-3.3	IGI	Worm	WB:WBPaper00027030\|PMID:16435200
Biological Process	GO:0006684	sphingomyelin metabolic process	CLN3_HUMAN	IMP	Human	PMID:15240864
Biological Process	GO:0006684	sphingomyelin metabolic process	Cln3	ISS	Rat	RGD:1600115
Biological Process	GO:0007035	vacuolar acidification	btn1	IMP	Pombe	PMID:16291725
Biological Process	GO:0007035	vacuolar acidification	btn1	IGI	Pombe	PMID:16291725
Biological Process	GO:0007033	vacuole organization and biogenesis	btn1	IMP	Pombe	PMID:16291725

Gene Ontology Evidence Code Abbreviations:

IC Inferred by curator

IDA Inferred from direct assay

IEA Inferred from electronic annotation

IEP Inferred from expression pattern

IGC Inferred from genomic context

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

ISS Inferred from sequence or structural similarity

NAS Non-traceable Author Statement

ND No biological data available

RCA Reviewed computational analysis

TAS Traceable author statement

NR Not recorded (appears in some legacy annotations)