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Involved in

GO wiki (new pages) - Fri, 03/09/2018 - 12:59

Vanaukenk: /* Examples of Usage */

== Overview ==
=== Definition ===
=== Child Terms ===

== Examples of Usage ==
=== glycolysis ===
=== signaling pathways ===

== Quality Control Checks ==

== Relations Ontology ==
[http://www.ontobee.org/ontology/RO?iri=http://purl.obolibrary.org/obo/RO_0002331 involved in]

== Review Status ==

Last reviewed: March 9, 2018

[http://wiki.geneontology.org/index.php/Biological_Process Back to: Biological Process]

[[Category: Annotation]]
[[Category: Relations]] Vanaukenk
Categories: GO Internal

Acts upstream of, negative effect

GO wiki (new pages) - Fri, 03/09/2018 - 12:59

Vanaukenk: /* Overview */

== Overview ==
=== Definition ===
=== Child Terms ===

== Examples of Usage ==

== Quality Control Checks ==

== Relations Ontology ==

== Review Status ==

Last reviewed: March 9, 2018

[http://wiki.geneontology.org/index.php/Biological_Process Back to: Biological Process]

[[Category: Annotation]]
[[Category: Relations]] Vanaukenk
Categories: GO Internal

Acts upstream of, positive effect

GO wiki (new pages) - Fri, 03/09/2018 - 12:59

Vanaukenk: /* Examples of Usage */

== Overview ==
=== Definition ===
=== Child Terms ===

== Examples of Usage ==
=== Genes involved in sperm motility can also act upstream of, positive effect in fertilization ===
=== Genes involved in Ras lipidation can also act usptream of, postive effect in Ras protein signal transduction ===

== Quality Control Checks ==

== Relations Ontology ==

== Review Status ==

Last reviewed: March 9, 2018

[http://wiki.geneontology.org/index.php/Biological_Process Back to: Biological Process]

[[Category: Annotation]]
[[Category: Relations]] Vanaukenk
Categories: GO Internal

Acts upstream of

GO wiki (new pages) - Fri, 03/09/2018 - 12:59

Vanaukenk:

== Overview ==
=== Definition ===
=== Child Terms ===

== Examples of Usage ==

== Quality Control Checks ==

== Relations Ontology ==
[http://www.ontobee.org/ontology/RO?iri=http://purl.obolibrary.org/obo/RO_0002263 acts upstream of]

== Review Status ==

Last reviewed: March 9, 2018

[http://wiki.geneontology.org/index.php/Biological_Process Back to: Biological Process]

[[Category: Annotation]]
[[Category: Relations]] Vanaukenk
Categories: GO Internal

Acts upstream of or within, negative effect

GO wiki (new pages) - Fri, 03/09/2018 - 12:58

Vanaukenk:

== Overview ==
=== Definition ===
=== Child Terms ===

== Examples of Usage ==

== Quality Control Checks ==

== Relations Ontology ==

== Review Status ==

Last reviewed: March 9, 2018

[http://wiki.geneontology.org/index.php/Biological_Process Back to: Biological Process]

[[Category: Annotation]]
[[Category: Relations]] Vanaukenk
Categories: GO Internal

Acts upstream of or within, positive effect

GO wiki (new pages) - Fri, 03/09/2018 - 12:57

Vanaukenk:

== Overview ==
=== Definition ===
=== Child Terms ===

== Examples of Usage ==

== Quality Control Checks ==

== Relations Ontology ==

== Review Status ==

Last reviewed: March 9, 2018

[http://wiki.geneontology.org/index.php/Biological_Process Back to: Biological Process]

[[Category: Annotation]]
[[Category: Relations]] Vanaukenk
Categories: GO Internal

Acts upstream of or within

GO wiki (new pages) - Fri, 03/09/2018 - 12:57

Vanaukenk:

== Overview ==
=== Definition ===
=== Child Terms ===

== Examples of Usage ==

== Quality Control Checks ==

== Relations Ontology ==
[http://www.ontobee.org/ontology/RO?iri=http://purl.obolibrary.org/obo/RO_0002264 acts upstream of or within]

== Review Status ==

Last reviewed: March 9, 2018

[http://wiki.geneontology.org/index.php/Biological_Process Back to: Biological Process]

[[Category: Annotation]]
[[Category: Relations]] Vanaukenk
Categories: GO Internal

Ontology meeting 2018-03-12

GO wiki (new pages) - Fri, 03/09/2018 - 10:05

Vanaukenk: Created page with "= Conference Line = *Zoom: https://stanford.zoom.us/j/828418143 = Agenda = ==GH project link== https://github.com/geneontology/go-ontology/projects/1 == Editors Discussio..."

= Conference Line =

*Zoom: https://stanford.zoom.us/j/828418143

= Agenda =


==GH project link==
https://github.com/geneontology/go-ontology/projects/1

== Editors Discussion ==
=== Protein Complexes ===
*Do we have guidelines written up anywhere for how to name and define protein complexes?
=== GOC meeting in NYC ===

=== Recent tickets about extracellular matrix. Should this be turned into a miniproject? ===

= Minutes =
*On call:


[[Category: Ontology]]
[[Category: Meetings]] Vanaukenk
Categories: GO Internal

GO-CAM Noctua Call 2018-03-14

GO wiki (new pages) - Wed, 03/07/2018 - 08:25

Vanaukenk: /* Demonstration of Simple Annoton Editor */

= Meeting URL =
*https://stanford.zoom.us/j/679970729

= Agenda =
== Simple Annoton Editor ==

== Progress Towards Noctua 1.0 Release ==
*[https://github.com/orgs/geneontology/projects/6 Review of github tickets for Noctua 1.0]

== Proposal for Consumer Interface, Downloads ==
*Software group will discuss ideas, proposal for first iteration of consumer interface


= Minutes =
*On call:

== Simple Annoton Editor ==

== Progress Towards Noctua 1.0 Release ==

== Proposal for Consumer Interface, Downloads ==


[[Category: Annotation Working Group]] Vanaukenk
Categories: GO Internal

Manager Call 2018-03-01

GO wiki (new pages) - Wed, 03/07/2018 - 06:32

Vanaukenk: /* NYC Meeting Agenda */

[[Category:GO Managers Meetings]]

= Call in info=
https://stanford.zoom.us/j/754529609

= Agenda =
== NYC Meeting Agenda ==
*Need to remind people to register
*Start working on the agenda in more detail
**https://github.com/geneontology/go-ontology/milestone/5
**https://github.com/geneontology/go-annotation/milestone/2

== Working Groups/Projects ==
=== Expanded Set of Relations ===
*Implementation requirements to meet our May goal of at least having acts_upstream_of_or_within
**Guidelines/examples for use
***acts upstream of: sperm motility, lipidation of ras, glycine transport -> heme biosynthesis
***regulation: glycolysis, signaling
***involved in: F-P links
***make use of other F-P co-annotation
***other ontology relations could be used to devise rules
***PAINT annotations
**Have a mechanism for groups to propose new rules
**Review annotations to process and regulation of process
***Can Mary D. generate lists for all groups, put on a webpage for review?
**Other software support needed for this?

== Noctua 1.0 Rollout ==
* Merge Tremayne's fork with Noctua-dev for further testing
* Some outstanding issues on SAE
* Single source file for MODs to consume

== GO Helpdesk ==


= Minutes =
*On call: Vanaukenk
Categories: GO Internal

Ontology meeting 2018-03-05

GO wiki (new pages) - Sat, 03/03/2018 - 08:11

David: Created page with "= Conference Line = *Zoom: https://stanford.zoom.us/j/828418143 = Agenda = ==GH project link== https://github.com/geneontology/go-ontology/projects/1 == Editors Discussio..."

= Conference Line =

*Zoom: https://stanford.zoom.us/j/828418143

= Agenda =


==GH project link==
https://github.com/geneontology/go-ontology/projects/1

== Editors Discussion ==
GOC meeting in NYC

= Minutes =
*On call:


[[Category: Ontology]]
[[Category: Meetings]] David
Categories: GO Internal

2018 NYU SAB Meeting Agenda

GO wiki (new pages) - Wed, 02/28/2018 - 10:38

Pascale: Created page with "Category: GO Consortium Meetings =TO DO= * Go over last SAB report, make sure we've addressed everything * What materials do we need to prepare in advance ? ** Update..."

[[Category: GO Consortium Meetings]]


=TO DO=
* Go over last SAB report, make sure we've addressed everything
* What materials do we need to prepare in advance ?
** Update on priorities/progress
** Metrics of our accomplishments

* Are there any specific questions we have for the SAB? Pascale
Categories: GO Internal

GO-CAM Noctua Call 2018-02-28

GO wiki (new pages) - Tue, 02/27/2018 - 17:02

Vanaukenk: /* Demonstration of Simple Annoton Editor */

= Meeting URL =
*https://stanford.zoom.us/j/679970729

= Agenda =
== Demonstration of Simple Annoton Editor ==
*Paul T. and Tremayne will demonstrate the latest development on the Simple Annotaton Editor (SAE) curation interface for Noctua
*[https://docs.google.com/spreadsheets/d/1ZESgrKU0c8vI6mBFtwPA1g-rtl-4AVzCjUQmnBdo-zI/edit#gid=696611174 Test cases Google spreadsheet]
*[https://github.com/geneontology/simple-annoton-editor/issues geneontology/simple-annoton-editor tracker in github]

== Progress Towards Noctua 1.0 Release ==
*[https://github.com/orgs/geneontology/projects/6 Review of github tickets for Noctua 1.0]


= Minutes =
*On call:


[[Category: Annotation Working Group]] Vanaukenk
Categories: GO Internal

Ontology meeting 2018-02-26

GO wiki (new pages) - Mon, 02/26/2018 - 04:52

David: Created page with "= Conference Line = *Zoom: https://stanford.zoom.us/j/828418143 = Agenda = ==GH project link== https://github.com/geneontology/go-ontology/projects/1 == Editors Discussio..."

= Conference Line =

*Zoom: https://stanford.zoom.us/j/828418143

= Agenda =


==GH project link==
https://github.com/geneontology/go-ontology/projects/1

== Editors Discussion ==
A brief review of the GH ticket-closing jamboree.

= Minutes =
*On call:


[[Category: Ontology]]
[[Category: Meetings]] David
Categories: GO Internal