GO Internal
Involved in
Vanaukenk: /* Examples of Usage */
== Overview ===== Definition ===
=== Child Terms ===
== Examples of Usage ==
=== glycolysis ===
=== signaling pathways ===
== Quality Control Checks ==
== Relations Ontology ==
[http://www.ontobee.org/ontology/RO?iri=http://purl.obolibrary.org/obo/RO_0002331 involved in]
== Review Status ==
Last reviewed: March 9, 2018
[http://wiki.geneontology.org/index.php/Biological_Process Back to: Biological Process]
[[Category: Annotation]]
[[Category: Relations]] Vanaukenk
Acts upstream of, negative effect
Vanaukenk: /* Overview */
== Overview ===== Definition ===
=== Child Terms ===
== Examples of Usage ==
== Quality Control Checks ==
== Relations Ontology ==
== Review Status ==
Last reviewed: March 9, 2018
[http://wiki.geneontology.org/index.php/Biological_Process Back to: Biological Process]
[[Category: Annotation]]
[[Category: Relations]] Vanaukenk
Acts upstream of, positive effect
Vanaukenk: /* Examples of Usage */
== Overview ===== Definition ===
=== Child Terms ===
== Examples of Usage ==
=== Genes involved in sperm motility can also act upstream of, positive effect in fertilization ===
=== Genes involved in Ras lipidation can also act usptream of, postive effect in Ras protein signal transduction ===
== Quality Control Checks ==
== Relations Ontology ==
== Review Status ==
Last reviewed: March 9, 2018
[http://wiki.geneontology.org/index.php/Biological_Process Back to: Biological Process]
[[Category: Annotation]]
[[Category: Relations]] Vanaukenk
Acts upstream of
Vanaukenk:
== Overview ===== Definition ===
=== Child Terms ===
== Examples of Usage ==
== Quality Control Checks ==
== Relations Ontology ==
[http://www.ontobee.org/ontology/RO?iri=http://purl.obolibrary.org/obo/RO_0002263 acts upstream of]
== Review Status ==
Last reviewed: March 9, 2018
[http://wiki.geneontology.org/index.php/Biological_Process Back to: Biological Process]
[[Category: Annotation]]
[[Category: Relations]] Vanaukenk
Acts upstream of or within, negative effect
Vanaukenk:
== Overview ===== Definition ===
=== Child Terms ===
== Examples of Usage ==
== Quality Control Checks ==
== Relations Ontology ==
== Review Status ==
Last reviewed: March 9, 2018
[http://wiki.geneontology.org/index.php/Biological_Process Back to: Biological Process]
[[Category: Annotation]]
[[Category: Relations]] Vanaukenk
Acts upstream of or within, positive effect
Vanaukenk:
== Overview ===== Definition ===
=== Child Terms ===
== Examples of Usage ==
== Quality Control Checks ==
== Relations Ontology ==
== Review Status ==
Last reviewed: March 9, 2018
[http://wiki.geneontology.org/index.php/Biological_Process Back to: Biological Process]
[[Category: Annotation]]
[[Category: Relations]] Vanaukenk
Acts upstream of or within
Vanaukenk:
== Overview ===== Definition ===
=== Child Terms ===
== Examples of Usage ==
== Quality Control Checks ==
== Relations Ontology ==
[http://www.ontobee.org/ontology/RO?iri=http://purl.obolibrary.org/obo/RO_0002264 acts upstream of or within]
== Review Status ==
Last reviewed: March 9, 2018
[http://wiki.geneontology.org/index.php/Biological_Process Back to: Biological Process]
[[Category: Annotation]]
[[Category: Relations]] Vanaukenk
Ontology meeting 2018-03-12
Vanaukenk: Created page with "= Conference Line = *Zoom: https://stanford.zoom.us/j/828418143 = Agenda = ==GH project link== https://github.com/geneontology/go-ontology/projects/1 == Editors Discussio..."
= Conference Line =*Zoom: https://stanford.zoom.us/j/828418143
= Agenda =
==GH project link==
https://github.com/geneontology/go-ontology/projects/1
== Editors Discussion ==
=== Protein Complexes ===
*Do we have guidelines written up anywhere for how to name and define protein complexes?
=== GOC meeting in NYC ===
=== Recent tickets about extracellular matrix. Should this be turned into a miniproject? ===
= Minutes =
*On call:
[[Category: Ontology]]
[[Category: Meetings]] Vanaukenk
GO-CAM Noctua Call 2018-03-14
Vanaukenk: /* Demonstration of Simple Annoton Editor */
= Meeting URL =*https://stanford.zoom.us/j/679970729
= Agenda =
== Simple Annoton Editor ==
== Progress Towards Noctua 1.0 Release ==
*[https://github.com/orgs/geneontology/projects/6 Review of github tickets for Noctua 1.0]
== Proposal for Consumer Interface, Downloads ==
*Software group will discuss ideas, proposal for first iteration of consumer interface
= Minutes =
*On call:
== Simple Annoton Editor ==
== Progress Towards Noctua 1.0 Release ==
== Proposal for Consumer Interface, Downloads ==
[[Category: Annotation Working Group]] Vanaukenk
Manager Call 2018-03-01
Vanaukenk: /* NYC Meeting Agenda */
[[Category:GO Managers Meetings]]= Call in info=
https://stanford.zoom.us/j/754529609
= Agenda =
== NYC Meeting Agenda ==
*Need to remind people to register
*Start working on the agenda in more detail
**https://github.com/geneontology/go-ontology/milestone/5
**https://github.com/geneontology/go-annotation/milestone/2
== Working Groups/Projects ==
=== Expanded Set of Relations ===
*Implementation requirements to meet our May goal of at least having acts_upstream_of_or_within
**Guidelines/examples for use
***acts upstream of: sperm motility, lipidation of ras, glycine transport -> heme biosynthesis
***regulation: glycolysis, signaling
***involved in: F-P links
***make use of other F-P co-annotation
***other ontology relations could be used to devise rules
***PAINT annotations
**Have a mechanism for groups to propose new rules
**Review annotations to process and regulation of process
***Can Mary D. generate lists for all groups, put on a webpage for review?
**Other software support needed for this?
== Noctua 1.0 Rollout ==
* Merge Tremayne's fork with Noctua-dev for further testing
* Some outstanding issues on SAE
* Single source file for MODs to consume
== GO Helpdesk ==
= Minutes =
*On call: Vanaukenk
Ontology meeting 2018-03-05
David: Created page with "= Conference Line = *Zoom: https://stanford.zoom.us/j/828418143 = Agenda = ==GH project link== https://github.com/geneontology/go-ontology/projects/1 == Editors Discussio..."
= Conference Line =*Zoom: https://stanford.zoom.us/j/828418143
= Agenda =
==GH project link==
https://github.com/geneontology/go-ontology/projects/1
== Editors Discussion ==
GOC meeting in NYC
= Minutes =
*On call:
[[Category: Ontology]]
[[Category: Meetings]] David
2018 NYU SAB Meeting Agenda
Pascale: Created page with "Category: GO Consortium Meetings =TO DO= * Go over last SAB report, make sure we've addressed everything * What materials do we need to prepare in advance ? ** Update..."
[[Category: GO Consortium Meetings]]=TO DO=
* Go over last SAB report, make sure we've addressed everything
* What materials do we need to prepare in advance ?
** Update on priorities/progress
** Metrics of our accomplishments
* Are there any specific questions we have for the SAB? Pascale
GO-CAM Noctua Call 2018-02-28
Vanaukenk: /* Demonstration of Simple Annoton Editor */
= Meeting URL =*https://stanford.zoom.us/j/679970729
= Agenda =
== Demonstration of Simple Annoton Editor ==
*Paul T. and Tremayne will demonstrate the latest development on the Simple Annotaton Editor (SAE) curation interface for Noctua
*[https://docs.google.com/spreadsheets/d/1ZESgrKU0c8vI6mBFtwPA1g-rtl-4AVzCjUQmnBdo-zI/edit#gid=696611174 Test cases Google spreadsheet]
*[https://github.com/geneontology/simple-annoton-editor/issues geneontology/simple-annoton-editor tracker in github]
== Progress Towards Noctua 1.0 Release ==
*[https://github.com/orgs/geneontology/projects/6 Review of github tickets for Noctua 1.0]
= Minutes =
*On call:
[[Category: Annotation Working Group]] Vanaukenk
Ontology meeting 2018-02-26
David: Created page with "= Conference Line = *Zoom: https://stanford.zoom.us/j/828418143 = Agenda = ==GH project link== https://github.com/geneontology/go-ontology/projects/1 == Editors Discussio..."
= Conference Line =*Zoom: https://stanford.zoom.us/j/828418143
= Agenda =
==GH project link==
https://github.com/geneontology/go-ontology/projects/1
== Editors Discussion ==
A brief review of the GH ticket-closing jamboree.
= Minutes =
*On call:
[[Category: Ontology]]
[[Category: Meetings]] David