format-version: 1.2
date: 25:09:2009 11:40
auto-generated-by: OBO-Edit 2.1-beta1
saved-by: jane
synonymtypedef: systematic_synonym "Systematic synonym" EXACT
subsetdef: goslim_candida "Candida GO slim"
subsetdef: goslim_generic "Generic GO slim"
subsetdef: goslim_goa "GOA and proteome slim"
subsetdef: goslim_pir "PIR GO slim"
subsetdef: goslim_plant "Plant GO slim"
subsetdef: goslim_pombe "Fission yeast GO slim"
subsetdef: goslim_yeast "Yeast GO slim"
subsetdef: gosubset_prok "Prokaryotic GO subset"
remark: cvs version: $Revision: 1.7 $

[Term]
id: GO:0000747
name: conjugation with cellular fusion
namespace: biological_process
alt_id: GO:0007322
alt_id: GO:0007333
alt_id: GO:0030461
alt_id: GO:0030477
def: "A conjugation process that results in the union of cellular and genetic information from compatible mating types. An example of this process is found in Saccharomyces cerevisiae." [GOC:elh]
subset: goslim_pombe
synonym: "cell fusion" RELATED []
synonym: "mating" RELATED []
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0000910
name: cytokinesis
namespace: biological_process
alt_id: GO:0007104
alt_id: GO:0016288
def: "A cellular process resulting in the division of the cytoplasm of a cell and its separation into two daughter cells. Cytokinesis usually occurs after growth, replication, and segregation of cellular components." [GOC:ai]
subset: goslim_candida
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
xref: Reactome:449273 "Mitotic Telophase /Cytokinesis"
xref: Reactome:470393 "Mitotic Telophase /Cytokinesis"
xref: Reactome:488068 "Mitotic Telophase /Cytokinesis"
xref: Reactome:508035 "Mitotic Telophase /Cytokinesis"
xref: Reactome:517891 "Mitotic Telophase /Cytokinesis"
xref: Reactome:526715 "Mitotic Telophase /Cytokinesis"
xref: Reactome:531490 "Mitotic Telophase /Cytokinesis"
xref: Reactome:542630 "Mitotic Telophase /Cytokinesis"
xref: Reactome:547945 "Mitotic Telophase /Cytokinesis"
xref: Reactome:552520 "Mitotic Telophase /Cytokinesis"
xref: Reactome:558142 "Mitotic Telophase /Cytokinesis"
xref: Reactome:586024 "Mitotic Telophase /Cytokinesis"
xref: Reactome:592880 "Mitotic Telophase /Cytokinesis"
xref: Reactome:68884 "Mitotic Telophase /Cytokinesis"
xref: Wikipedia:Cytokinesis
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0005975
name: carbohydrate metabolic process
namespace: biological_process
def: "The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule." [GOC:mah, ISBN:0198506732 "Oxford Dictionary of Biochemistry and Molecular Biology"]
subset: goslim_candida
subset: goslim_generic
subset: goslim_pir
subset: goslim_plant
subset: goslim_pombe
subset: gosubset_prok
synonym: "carbohydrate metabolism" EXACT []
xref: Reactome:448487 "Metabolism of carbohydrates"
xref: Reactome:469617 "Metabolism of carbohydrates"
xref: Reactome:487336 "Metabolism of carbohydrates"
xref: Reactome:507287 "Metabolism of carbohydrates"
xref: Reactome:517301 "Metabolism of carbohydrates"
xref: Reactome:526186 "Metabolism of carbohydrates"
xref: Reactome:531076 "Metabolism of carbohydrates"
xref: Reactome:536449 "Metabolism of carbohydrates"
xref: Reactome:542153 "Metabolism of carbohydrates"
xref: Reactome:547511 "Metabolism of carbohydrates"
xref: Reactome:552109 "Metabolism of carbohydrates"
xref: Reactome:557702 "Metabolism of carbohydrates"
xref: Reactome:568311 "Metabolism of carbohydrates"
xref: Reactome:581513 "Metabolism of carbohydrates"
xref: Reactome:585745 "Metabolism of carbohydrates"
xref: Reactome:592407 "Metabolism of carbohydrates"
xref: Reactome:595291 "Metabolism of carbohydrates"
xref: Reactome:597267 "Metabolism of carbohydrates"
xref: Reactome:598076 "Metabolism of carbohydrates"
xref: Reactome:599604 "Metabolism of carbohydrates"
xref: Reactome:600550 "Metabolism of carbohydrates"
xref: Reactome:602409 "Metabolism of carbohydrates"
xref: Reactome:71387 "Metabolism of carbohydrates"
xref: Wikipedia:Carbohydrate_metabolism
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0006091
name: generation of precursor metabolites and energy
namespace: biological_process
def: "The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances." [GOC:jl]
subset: goslim_candida
subset: goslim_generic
subset: goslim_pir
subset: goslim_plant
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "energy pathways" BROAD []
synonym: "intermediary metabolism" RELATED [GOC:mah]
synonym: "metabolic energy generation" RELATED []
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0006259
name: DNA metabolic process
namespace: biological_process
def: "The chemical reactions and pathways involving DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides." [ISBN:0198506732 "Oxford Dictionary of Biochemistry and Molecular Biology"]
subset: goslim_candida
subset: goslim_generic
subset: goslim_pir
subset: goslim_plant
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "DNA metabolism" EXACT []
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0006260
name: DNA replication
namespace: biological_process
def: "The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA." [ISBN:0198506732 "Oxford Dictionary of Biochemistry and Molecular Biology"]
comment: See also the biological process terms 'DNA-dependent DNA replication ; GO:0006261' and 'RNA-dependent DNA replication ; GO:0006278'.
subset: goslim_pir
subset: goslim_pombe
subset: gosubset_prok
synonym: "DNA biosynthesis" RELATED []
synonym: "DNA biosynthetic process" RELATED []
synonym: "DNA synthesis" RELATED []
xref: Reactome:176101 "Recruitment of Rad17-RFC complex to DNA"
xref: Reactome:176116 "Recruitment and activation of Chk1"
xref: Reactome:176175 "Stalling of DNA replication fork and RPA binding"
xref: Reactome:176187 "Activation of ATR in response to replication stress"
xref: Reactome:176250 "Binding of ATR-ATRIP to the RPA-ssDNA complex"
xref: Reactome:176264 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA"
xref: Reactome:176298 "Activation of claspin"
xref: Reactome:176318 "Loading of claspin onto DNA during replication origin firing"
xref: Reactome:429125 "Activation of claspin"
xref: Reactome:433202 "Binding of ATR-ATRIP to the RPA-ssDNA complex"
xref: Reactome:442012 "Loading of claspin onto DNA during replication origin firing"
xref: Reactome:446069 "Recruitment and activation of Chk1"
xref: Reactome:446123 "Recruitment of Rad17-RFC complex to DNA"
xref: Reactome:446153 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA"
xref: Reactome:447074 "Stalling of DNA replication fork and RPA binding"
xref: Reactome:448696 "Activation of ATR in response to replication stress"
xref: Reactome:463715 "Loading of claspin onto DNA during replication origin firing"
xref: Reactome:467450 "Recruitment of Rad17-RFC complex to DNA"
xref: Reactome:467477 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA"
xref: Reactome:468344 "Stalling of DNA replication fork and RPA binding"
xref: Reactome:470298 "Activation of ATR in response to replication stress"
xref: Reactome:472164 "Activation of claspin"
xref: Reactome:475516 "Binding of ATR-ATRIP to the RPA-ssDNA complex"
xref: Reactome:482185 "Loading of claspin onto DNA during replication origin firing"
xref: Reactome:485413 "Recruitment and activation of Chk1"
xref: Reactome:485440 "Recruitment of Rad17-RFC complex to DNA"
xref: Reactome:485461 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA"
xref: Reactome:486163 "Stalling of DNA replication fork and RPA binding"
xref: Reactome:487512 "Activation of ATR in response to replication stress"
xref: Reactome:490390 "Activation of claspin"
xref: Reactome:502397 "Loading of claspin onto DNA during replication origin firing"
xref: Reactome:505179 "Recruitment and activation of Chk1"
xref: Reactome:507473 "Activation of ATR in response to replication stress"
xref: Reactome:514771 "Loading of claspin onto DNA during replication origin firing"
xref: Reactome:516172 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA"
xref: Reactome:517816 "Activation of ATR in response to replication stress"
xref: Reactome:525168 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA"
xref: Reactome:526692 "Activation of ATR in response to replication stress"
xref: Reactome:531467 "Activation of ATR in response to replication stress"
xref: Reactome:536852 "Activation of ATR in response to replication stress"
xref: Reactome:541523 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA"
xref: Reactome:542605 "Activation of ATR in response to replication stress"
xref: Reactome:546964 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA"
xref: Reactome:547923 "Activation of ATR in response to replication stress"
xref: Wikipedia:DNA_replication
is_a: GO:0006259 ! DNA metabolic process

[Term]
id: GO:0006281
name: DNA repair
namespace: biological_process
def: "The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway." [PMID:11563486]
subset: goslim_pir
subset: goslim_pombe
subset: gosubset_prok
xref: Reactome:448579 "DNA Repair"
xref: Reactome:449225 "DNA Damage Reversal"
xref: Reactome:469708 "DNA Repair"
xref: Reactome:470344 "DNA Damage Reversal"
xref: Reactome:487420 "DNA Repair"
xref: Reactome:488024 "DNA Damage Reversal"
xref: Reactome:507375 "DNA Repair"
xref: Reactome:507985 "DNA Damage Reversal"
xref: Reactome:517374 "DNA Repair"
xref: Reactome:526250 "DNA Repair"
xref: Reactome:531127 "DNA Repair"
xref: Reactome:536499 "DNA Repair"
xref: Reactome:542209 "DNA Repair"
xref: Reactome:542599 "DNA Damage Reversal"
xref: Reactome:547563 "DNA Repair"
xref: Reactome:552173 "DNA Repair"
xref: Reactome:557757 "DNA Repair"
xref: Reactome:558121 "DNA Damage Reversal"
xref: Reactome:568370 "DNA Repair"
xref: Reactome:568747 "DNA Damage Reversal"
xref: Reactome:581572 "DNA Repair"
xref: Reactome:581951 "DNA Damage Reversal"
xref: Reactome:585783 "DNA Repair"
xref: Reactome:592468 "DNA Repair"
xref: Reactome:595411 "DNA Repair"
xref: Reactome:597351 "DNA Repair"
xref: Reactome:598160 "DNA Repair"
xref: Reactome:599712 "DNA Repair"
xref: Reactome:600616 "DNA Repair"
xref: Reactome:600694 "DNA Damage Reversal"
xref: Reactome:602518 "DNA Repair"
xref: Reactome:602608 "DNA Damage Reversal"
xref: Reactome:73894 "DNA Repair"
xref: Reactome:73942 "DNA Damage Reversal"
xref: Wikipedia:DNA_repair
is_a: GO:0006950 ! response to stress
is_a: GO:0006259 ! DNA metabolic process

[Term]
id: GO:0006310
name: DNA recombination
namespace: biological_process
def: "Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction." [ISBN:0198506732 "Oxford Dictionary of Biochemistry and Molecular Biology"]
subset: goslim_pombe
subset: gosubset_prok
is_a: GO:0006259 ! DNA metabolic process

[Term]
id: GO:0006350
name: transcription
namespace: biological_process
def: "The synthesis of either RNA on a template of DNA or DNA on a template of RNA." [ISBN:0198506732 "Oxford Dictionary of Biochemistry and Molecular Biology"]
subset: goslim_candida
subset: goslim_generic
subset: goslim_pir
subset: goslim_plant
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
xref: Reactome:448636 "Transcription"
xref: Reactome:469764 "Transcription"
xref: Reactome:487521 "Transcription"
xref: Reactome:507482 "Transcription"
xref: Reactome:517466 "Transcription"
xref: Reactome:526339 "Transcription"
xref: Reactome:531172 "Transcription"
xref: Reactome:536547 "Transcription"
xref: Reactome:542268 "Transcription"
xref: Reactome:547614 "Transcription"
xref: Reactome:552218 "Transcription"
xref: Reactome:557808 "Transcription"
xref: Reactome:568425 "Transcription"
xref: Reactome:581627 "Transcription"
xref: Reactome:585958 "Transcription"
xref: Reactome:592524 "Transcription"
xref: Reactome:595359 "Transcription"
xref: Reactome:74159 "Transcription"
xref: Wikipedia:Transcription_(genetics)
relationship: part_of GO:0008150 ! biological_process
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0006399
name: tRNA metabolic process
namespace: biological_process
def: "The chemical reactions and pathways involving tRNA, transfer RNA, a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. Transfer RNA is characterized by the presence of many unusual minor bases, the function of which has not been completely established." [ISBN:0198506732 "Oxford Dictionary of Biochemistry and Molecular Biology"]
subset: goslim_pombe
subset: gosubset_prok
synonym: "tRNA metabolism" EXACT []
is_a: GO:0016070 ! RNA metabolic process

[Term]
id: GO:0006412
name: translation
namespace: biological_process
alt_id: GO:0006416
alt_id: GO:0006453
alt_id: GO:0043037
def: "The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome." [GOC:go_curators]
subset: goslim_candida
subset: goslim_generic
subset: goslim_pir
subset: goslim_plant
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "protein anabolism" EXACT []
synonym: "protein biosynthesis" EXACT []
synonym: "protein formation" EXACT []
synonym: "protein synthesis" EXACT []
synonym: "protein translation" EXACT []
xref: Reactome:448800 "Translation"
xref: Reactome:469916 "Translation"
xref: Reactome:487622 "Translation"
xref: Reactome:507577 "Translation"
xref: Reactome:517550 "Translation"
xref: Reactome:526417 "Translation"
xref: Reactome:531240 "Translation"
xref: Reactome:536611 "Translation"
xref: Reactome:542335 "Translation"
xref: Reactome:547676 "Translation"
xref: Reactome:552260 "Translation"
xref: Reactome:557879 "Translation"
xref: Reactome:568477 "Translation"
xref: Reactome:581688 "Translation"
xref: Reactome:585834 "Translation"
xref: Reactome:592595 "Translation"
xref: Reactome:595406 "Translation"
xref: Reactome:597395 "Translation"
xref: Reactome:598177 "Translation"
xref: Reactome:599776 "Translation"
xref: Reactome:72766 "Translation"
xref: Wikipedia:Translation_(genetics)
relationship: part_of GO:0008150 ! biological_process
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0006457
name: protein folding
namespace: biological_process
alt_id: GO:0007022
alt_id: GO:0007024
alt_id: GO:0007025
def: "The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure." [GOC:go_curators, GOC:rb]
subset: goslim_candida
subset: goslim_pir
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "alpha-tubulin folding" NARROW [GOC:mah]
synonym: "beta-tubulin folding" NARROW [GOC:mah]
synonym: "chaperone activity" RELATED []
synonym: "chaperonin ATPase activity" RELATED []
synonym: "chaperonin-mediated tubulin folding" NARROW [GOC:mah]
synonym: "co-chaperone activity" RELATED []
synonym: "co-chaperonin activity" RELATED []
synonym: "glycoprotein-specific chaperone activity" RELATED []
synonym: "non-chaperonin molecular chaperone ATPase activity" RELATED []
synonym: "protein complex assembly, multichaperone pathway" RELATED []
xref: Reactome:389960 "Formation of tubulin folding intermediates by CCT/TriC"
xref: Reactome:389967 "Formation of tubulin folding intermediates by CCT/TriC"
xref: Reactome:390466 "Chaperonin-mediated protein folding"
xref: Reactome:392033 "Cooperation of Prefoldin and TriC/CCT in actin and tubulin folding"
xref: Reactome:448640 "Chaperonin-mediated protein folding"
xref: Reactome:448770 "Formation of tubulin folding intermediates by CCT/TriC"
xref: Reactome:469768 "Chaperonin-mediated protein folding"
xref: Reactome:469885 "Formation of tubulin folding intermediates by CCT/TriC"
xref: Reactome:487587 "Formation of tubulin folding intermediates by CCT/TriC"
xref: Reactome:487589 "Chaperonin-mediated protein folding"
xref: Reactome:507422 "Chaperonin-mediated protein folding"
xref: Reactome:507545 "Formation of tubulin folding intermediates by CCT/TriC"
xref: Reactome:517425 "Chaperonin-mediated protein folding"
xref: Reactome:517525 "Formation of tubulin folding intermediates by CCT/TriC"
xref: Reactome:526299 "Chaperonin-mediated protein folding"
xref: Reactome:526394 "Formation of tubulin folding intermediates by CCT/TriC"
xref: Reactome:531205 "Formation of tubulin folding intermediates by CCT/TriC"
xref: Reactome:531207 "Chaperonin-mediated protein folding"
xref: Reactome:536535 "Chaperonin-mediated protein folding"
xref: Reactome:536580 "Formation of tubulin folding intermediates by CCT/TriC"
xref: Reactome:542256 "Chaperonin-mediated protein folding"
xref: Reactome:542306 "Formation of tubulin folding intermediates by CCT/TriC"
xref: Reactome:547600 "Chaperonin-mediated protein folding"
xref: Reactome:547647 "Formation of tubulin folding intermediates by CCT/TriC"
xref: Reactome:552207 "Chaperonin-mediated protein folding"
xref: Reactome:552239 "Formation of tubulin folding intermediates by CCT/TriC"
xref: Reactome:557798 "Chaperonin-mediated protein folding"
xref: Reactome:557852 "Formation of tubulin folding intermediates by CCT/TriC"
xref: Reactome:568411 "Chaperonin-mediated protein folding"
xref: Reactome:568446 "Formation of tubulin folding intermediates by CCT/TriC"
xref: Reactome:581613 "Chaperonin-mediated protein folding"
xref: Reactome:581659 "Formation of tubulin folding intermediates by CCT/TriC"
xref: Reactome:585812 "Formation of tubulin folding intermediates by CCT/TriC"
xref: Reactome:585814 "Chaperonin-mediated protein folding"
xref: Reactome:592510 "Chaperonin-mediated protein folding"
xref: Reactome:592570 "Formation of tubulin folding intermediates by CCT/TriC"
xref: Reactome:595349 "Chaperonin-mediated protein folding"
xref: Reactome:595388 "Formation of tubulin folding intermediates by CCT/TriC"
xref: Wikipedia:Protein_folding
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0006461
name: protein complex assembly
namespace: biological_process
def: "The aggregation, arrangement and bonding together of a set of components to form a protein complex." [GOC:ai]
subset: goslim_pombe
subset: gosubset_prok
synonym: "chaperone activity" RELATED []
synonym: "protein complex biosynthesis" EXACT []
synonym: "protein complex formation" EXACT []
is_a: GO:0008150 ! biological_process
relationship: part_of GO:0008150 ! biological_process

[Term]
id: GO:0006486
name: protein amino acid glycosylation
namespace: biological_process
def: "The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins." [http://cancerweb.ncl.ac.uk/]
subset: goslim_pombe
subset: gosubset_prok
relationship: part_of GO:0008150 ! biological_process
is_a: GO:0005975 ! carbohydrate metabolic process

[Term]
id: GO:0006520
name: cellular amino acid metabolic process
namespace: biological_process
def: "The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents." [ISBN:0198506732 "Oxford Dictionary of Biochemistry and Molecular Biology"]
subset: goslim_pombe
subset: gosubset_prok
synonym: "cellular amino acid metabolism" EXACT []
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0006605
name: protein targeting
namespace: biological_process
def: "The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif." [GOC:ma]
subset: goslim_pombe
subset: gosubset_prok
synonym: "nascent polypeptide association" RELATED []
synonym: "protein sorting along secretory pathway" NARROW []
xref: Wikipedia:Protein_targeting
is_a: GO:0006810 ! transport
relationship: part_of GO:0008150 ! biological_process

[Term]
id: GO:0006629
name: lipid metabolic process
namespace: biological_process
def: "The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids." [GOC:ma]
subset: goslim_candida
subset: goslim_generic
subset: goslim_pir
subset: goslim_plant
subset: goslim_pombe
subset: gosubset_prok
synonym: "lipid metabolism" EXACT []
xref: Reactome:448458 "Metabolism of lipids and lipoproteins"
xref: Reactome:469588 "Metabolism of lipids and lipoproteins"
xref: Reactome:487307 "Metabolism of lipids and lipoproteins"
xref: Reactome:507258 "Metabolism of lipids and lipoproteins"
xref: Reactome:517280 "Metabolism of lipids and lipoproteins"
xref: Reactome:526158 "Metabolism of lipids and lipoproteins"
xref: Reactome:531055 "Metabolism of lipids and lipoproteins"
xref: Reactome:536437 "Metabolism of lipids and lipoproteins"
xref: Reactome:542134 "Metabolism of lipids and lipoproteins"
xref: Reactome:547525 "Metabolism of lipids and lipoproteins"
xref: Reactome:552094 "Metabolism of lipids and lipoproteins"
xref: Reactome:557672 "Metabolism of lipids and lipoproteins"
xref: Reactome:568290 "Metabolism of lipids and lipoproteins"
xref: Reactome:581492 "Metabolism of lipids and lipoproteins"
xref: Reactome:585774 "Metabolism of lipids and lipoproteins"
xref: Reactome:592389 "Metabolism of lipids and lipoproteins"
xref: Reactome:595297 "Metabolism of lipids and lipoproteins"
xref: Reactome:597258 "Metabolism of lipids and lipoproteins"
xref: Reactome:598099 "Metabolism of lipids and lipoproteins"
xref: Reactome:599584 "Metabolism of lipids and lipoproteins"
xref: Reactome:600579 "Metabolism of lipids and lipoproteins"
xref: Reactome:602390 "Metabolism of lipids and lipoproteins"
xref: Reactome:73923 "Metabolism of lipids and lipoproteins"
xref: Wikipedia:Lipid_metabolism
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0006766
name: vitamin metabolic process
namespace: biological_process
def: "The chemical reactions and pathways involving vitamins. Vitamin is a general term for a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. Vitamins may be water-soluble or fat-soluble and usually serve as components of coenzyme systems." [GOC:ai]
subset: goslim_candida
subset: goslim_pir
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "vitamin metabolism" EXACT []
xref: Reactome:196854 "Metabolism of vitamins and cofactors"
xref: Reactome:448501 "Metabolism of vitamins and cofactors"
xref: Reactome:469631 "Metabolism of vitamins and cofactors"
xref: Reactome:487350 "Metabolism of vitamins and cofactors"
xref: Reactome:507301 "Metabolism of vitamins and cofactors"
xref: Reactome:517315 "Metabolism of vitamins and cofactors"
xref: Reactome:526200 "Metabolism of vitamins and cofactors"
xref: Reactome:531086 "Metabolism of vitamins and cofactors"
xref: Reactome:536459 "Metabolism of vitamins and cofactors"
xref: Reactome:542163 "Metabolism of vitamins and cofactors"
xref: Reactome:547521 "Metabolism of vitamins and cofactors"
xref: Reactome:552114 "Metabolism of vitamins and cofactors"
xref: Reactome:557706 "Metabolism of vitamins and cofactors"
xref: Reactome:568321 "Metabolism of vitamins and cofactors"
xref: Reactome:581523 "Metabolism of vitamins and cofactors"
xref: Reactome:585808 "Metabolism of vitamins and cofactors"
xref: Reactome:592410 "Metabolism of vitamins and cofactors"
xref: Reactome:595340 "Metabolism of vitamins and cofactors"
xref: Reactome:597308 "Metabolism of vitamins and cofactors"
xref: Reactome:598109 "Metabolism of vitamins and cofactors"
xref: Reactome:599609 "Metabolism of vitamins and cofactors"
xref: Reactome:600553 "Metabolism of vitamins and cofactors"
xref: Reactome:602413 "Metabolism of vitamins and cofactors"
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0006796
name: phosphate metabolic process
namespace: biological_process
def: "The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid." [GOC:ai]
subset: goslim_pombe
subset: gosubset_prok
synonym: "phosphate metabolism" EXACT []
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0006810
name: transport
namespace: biological_process
def: "The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism." [GOC:mah]
subset: goslim_candida
subset: goslim_generic
subset: goslim_goa
subset: goslim_pir
subset: goslim_plant
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "small molecule transport" NARROW []
synonym: "solute:solute exchange" NARROW []
is_a: GO:0008150 ! biological_process
relationship: part_of GO:0008150 ! biological_process

[Term]
id: GO:0006913
name: nucleocytoplasmic transport
namespace: biological_process
alt_id: GO:0000063
def: "The directed movement of molecules between the nucleus and the cytoplasm." [GOC:go_curators]
subset: goslim_pombe
synonym: "nucleocytoplasmic shuttling" NARROW []
relationship: part_of GO:0008150 ! biological_process
is_a: GO:0006810 ! transport

[Term]
id: GO:0006950
name: response to stress
namespace: biological_process
def: "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation)." [GOC:mah]
subset: goslim_candida
subset: goslim_generic
subset: goslim_plant
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "response to abiotic stress" RELATED []
synonym: "response to biotic stress" RELATED []
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0006996
name: organelle organization
namespace: biological_process
def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane." [GOC:mah]
subset: goslim_candida
subset: goslim_generic
subset: goslim_pir
subset: goslim_pombe
subset: gosubset_prok
synonym: "organelle organisation" EXACT [GOC:curators]
synonym: "organelle organization and biogenesis" EXACT [GOC:dph, GOC:jl, GOC:mah]
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0007005
name: mitochondrion organization
namespace: biological_process
def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components." [GOC:dph, GOC:jl, GOC:mah, GOC:sgd_curators, PMID:9786946]
subset: goslim_generic
subset: goslim_pir
subset: goslim_pombe
subset: goslim_yeast
synonym: "mitochondria organization" EXACT [GOC:mah]
synonym: "mitochondrion organisation" EXACT [GOC:mah]
synonym: "mitochondrion organization and biogenesis" RELATED [GOC:curators]
is_a: GO:0006996 ! organelle organization

[Term]
id: GO:0007010
name: cytoskeleton organization
namespace: biological_process
def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures." [GOC:dph, GOC:jl, GOC:mah]
subset: goslim_candida
subset: goslim_generic
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "cytoskeletal organization and biogenesis" RELATED [GOC:mah]
synonym: "cytoskeletal regulator activity" RELATED []
synonym: "cytoskeleton organisation" EXACT [GOC:curators]
synonym: "cytoskeleton organization and biogenesis" RELATED [GOC:mah]
is_a: GO:0006996 ! organelle organization

[Term]
id: GO:0007031
name: peroxisome organization
namespace: biological_process
def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules." [GOC:mah]
subset: goslim_pir
subset: goslim_pombe
subset: goslim_yeast
synonym: "peroxisome organisation" EXACT [GOC:curators]
synonym: "peroxisome organization and biogenesis" RELATED [GOC:mah]
synonym: "peroxisome-assembly ATPase activity" RELATED []
is_a: GO:0006996 ! organelle organization

[Term]
id: GO:0007033
name: vacuole organization
namespace: biological_process
def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vacuole." [GOC:mah]
subset: goslim_pir
subset: goslim_pombe
subset: goslim_yeast
synonym: "vacuolar assembly" EXACT []
synonym: "vacuole organisation" EXACT [GOC:curators]
synonym: "vacuole organization and biogenesis" RELATED [GOC:mah]
is_a: GO:0006996 ! organelle organization

[Term]
id: GO:0007059
name: chromosome segregation
namespace: biological_process
def: "The process by which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets." [GOC:ai]
subset: goslim_pir
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "chromosome division" EXACT []
synonym: "chromosome transmission" RELATED []
xref: Wikipedia:Chromosome_segregation
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0007126
name: meiosis
namespace: biological_process
def: "A cell cycle process comprising the steps by which a cell progresses through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations." [GOC:dph, GOC:mah, PMID:9334324]
subset: goslim_pombe
subset: goslim_yeast
xref: Wikipedia:Meiosis
is_a: GO:0008150 ! biological_process
relationship: part_of GO:0008150 ! biological_process

[Term]
id: GO:0007155
name: cell adhesion
namespace: biological_process
def: "The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules." [GOC:hb, GOC:pf]
subset: goslim_candida
subset: goslim_pir
subset: goslim_pombe
subset: gosubset_prok
synonym: "cell adhesion molecule activity" RELATED []
xref: Wikipedia:Cell_adhesion
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0007163
name: establishment or maintenance of cell polarity
namespace: biological_process
alt_id: GO:0030012
alt_id: GO:0030467
def: "Any cellular process that results in the specification, formation or maintenance of anisotropic intracellular organization or cell growth patterns." [GOC:mah]
subset: goslim_pombe
synonym: "establishment and/or maintenance of cell polarity" RELATED []
synonym: "establishment and/or maintenance of cell polarization" RELATED []
relationship: part_of GO:0008150 ! biological_process
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0007165
name: signal transduction
namespace: biological_process
def: "The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell." [GOC:go_curators]
subset: goslim_candida
subset: goslim_generic
subset: goslim_plant
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "signaling" EXACT []
synonym: "signaling cascade" EXACT []
synonym: "signalling" EXACT []
synonym: "signalling cascade" EXACT []
xref: Reactome:212718 "EGFR interacts with phospholipase C-gamma"
xref: Reactome:448734 "EGFR interacts with phospholipase C-gamma"
xref: Reactome:469856 "EGFR interacts with phospholipase C-gamma"
xref: Reactome:487553 "EGFR interacts with phospholipase C-gamma"
xref: Reactome:507509 "EGFR interacts with phospholipase C-gamma"
xref: Wikipedia:Signal_transduction
is_a: GO:0008150 ! biological_process
relationship: regulates GO:0008150 ! biological_process

[Term]
id: GO:0007346
name: regulation of mitotic cell cycle
namespace: biological_process
def: "Any process that modulates the rate or extent of progress through the mitotic cell cycle." [GOC:dph, GOC:go_curators, GOC:tb]
subset: goslim_pombe
synonym: "control of mitotic cell cycle progression" EXACT []
synonym: "mitotic cell cycle control" EXACT []
synonym: "mitotic cell cycle modulation" EXACT []
synonym: "mitotic cell cycle regulation" EXACT []
synonym: "mitotic cell cycle regulator" RELATED []
synonym: "modulation of mitotic cell cycle progression" EXACT []
synonym: "regulation of mitotic cell cycle progression" EXACT []
synonym: "regulation of progression through mitotic cell cycle" EXACT [GOC:dph, GOC:tb]
is_a: GO:0008150 ! biological_process
relationship: regulates GO:0008150 ! biological_process

[Term]
id: GO:0008150
name: biological_process
namespace: biological_process
alt_id: GO:0000004
alt_id: GO:0007582
def: "Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end." [GOC:go_curators, GOC:isa_complete]
comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. Note that when this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this.
subset: goslim_candida
subset: goslim_generic
subset: goslim_goa
subset: goslim_pir
subset: goslim_plant
subset: goslim_yeast
subset: gosubset_prok
synonym: "biological process" EXACT []
synonym: "biological process unknown" NARROW []
synonym: "physiological process" EXACT []
xref: Wikipedia:Biological_process

[Term]
id: GO:0016070
name: RNA metabolic process
namespace: biological_process
def: "The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage." [ISBN:0198506732 "Oxford Dictionary of Biochemistry and Molecular Biology"]
subset: goslim_candida
subset: goslim_pir
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "RNA metabolism" EXACT []
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0016071
name: mRNA metabolic process
namespace: biological_process
def: "The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes." [ISBN:0198506732 "Oxford Dictionary of Biochemistry and Molecular Biology"]
subset: goslim_pombe
subset: gosubset_prok
synonym: "mRNA metabolism" EXACT []
is_a: GO:0016070 ! RNA metabolic process

[Term]
id: GO:0016192
name: vesicle-mediated transport
namespace: biological_process
alt_id: GO:0006899
def: "The directed movement of substances into, out of or within a cell by a cellular process that begins with the formation of membrane-bounded vesicles in which the transported substances are enclosed or located in the vesicle membrane. Vesicles are then targeted to, and fuse with, an acceptor membrane." [GOC:ai, GOC:mah, ISBN:08789310662000]
subset: goslim_candida
subset: goslim_pir
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "nonselective vesicle transport" NARROW []
synonym: "protein sorting along secretory pathway" RELATED []
synonym: "vesicle trafficking" RELATED []
synonym: "vesicle transport" EXACT []
synonym: "vesicular transport" EXACT [GOC:mah]
relationship: part_of GO:0008150 ! biological_process
is_a: GO:0006810 ! transport

[Term]
id: GO:0016568
name: chromatin modification
namespace: biological_process
def: "The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure." [GOC:mah]
subset: goslim_pombe
is_a: GO:0051276 ! chromosome organization

[Term]
id: GO:0019725
name: cellular homeostasis
namespace: biological_process
def: "Any process involved in the maintenance of an internal equilibrium at the level of the cell." [GOC:isa_complete, GOC:jl, ISBN:0395825172]
subset: goslim_candida
subset: goslim_generic
subset: goslim_plant
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0030163
name: protein catabolic process
namespace: biological_process
def: "The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds." [GOC:mah]
subset: goslim_candida
subset: goslim_pombe
subset: gosubset_prok
synonym: "pheromone catabolic process" RELATED []
synonym: "pheromone catabolism" RELATED []
synonym: "protein breakdown" EXACT []
synonym: "protein catabolism" EXACT []
synonym: "protein degradation" EXACT []
xref: Wikipedia:Protein_catabolism
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0030437
name: ascospore formation
namespace: biological_process
alt_id: GO:0007151
def: "The process whereby cells that are products of meiosis acquire the specialized features of ascospores. Ascospores are generally found in clusters of four or eight spores within a single mother cell, the ascus, and are characteristic of the ascomycete fungi (phylum Ascomycota)." [GOC:mah, PMID:16339736]
subset: goslim_pombe
synonym: "ascospore biosynthesis" EXACT []
synonym: "spore formation" BROAD []
synonym: "sporulation" BROAD []
is_a: GO:0008150 ! biological_process
relationship: part_of GO:0008150 ! biological_process

[Term]
id: GO:0032569
name: gene-specific transcription from RNA polymerase II promoter
namespace: biological_process
def: "The specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. In addition to RNA polymerase II and the general transcription factors, specific transcription requires one or more specific factors that bind to specific DNA sequences or interact with the general transcription machinery." [GOC:mah]
subset: goslim_pombe
synonym: "specific transcription from RNA polymerase II promoter" EXACT [GOC:mah]
is_a: GO:0016070 ! RNA metabolic process
is_a: GO:0006350 ! transcription
relationship: part_of GO:0008150 ! biological_process

[Term]
id: GO:0034641
name: cellular nitrogen compound metabolic process
namespace: biological_process
def: "The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells." [GOC:mah]
subset: goslim_pombe
subset: gosubset_prok
synonym: "cellular nitrogen compound metabolism" EXACT []
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0042254
name: ribosome biogenesis
namespace: biological_process
alt_id: GO:0007046
def: "The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis." [GOC:ma]
subset: goslim_candida
subset: goslim_pir
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "ribosomal chaperone activity" RELATED []
synonym: "ribosome biogenesis and assembly" EXACT []
xref: Wikipedia:Ribosome_biogenesis
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0051186
name: cofactor metabolic process
namespace: biological_process
def: "The chemical reactions and pathways involving a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate." [GOC:ai]
subset: goslim_pir
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "cofactor metabolism" EXACT []
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0051276
name: chromosome organization
namespace: biological_process
alt_id: GO:0007001
alt_id: GO:0051277
def: "A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information." [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
subset: goslim_pir
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "chromosome organisation" EXACT []
synonym: "chromosome organization and biogenesis" RELATED [GOC:mah]
synonym: "maintenance of genome integrity" RELATED []
synonym: "nuclear genome maintenance" RELATED []
is_a: GO:0006996 ! organelle organization

[Term]
id: GO:0055085
name: transmembrane transport
namespace: biological_process
def: "The process whereby a solute is transported from one side of a membrane to the other. This process includes the actual movement of the solute, and any regulation and preparatory steps, such as reduction of the solute." [GOC:jid]
subset: goslim_pombe
xref: Reactome:382551 "Transmembrane transport of small molecules"
xref: Reactome:382556 "ABC-family proteins mediated transport"
xref: Reactome:448617 "ABC-family proteins mediated transport"
xref: Reactome:448618 "Transmembrane transport of small molecules"
xref: Reactome:469743 "ABC-family proteins mediated transport"
xref: Reactome:469744 "Transmembrane transport of small molecules"
xref: Reactome:487452 "ABC-family proteins mediated transport"
xref: Reactome:487453 "Transmembrane transport of small molecules"
xref: Reactome:507409 "ABC-family proteins mediated transport"
xref: Reactome:507410 "Transmembrane transport of small molecules"
xref: Reactome:517410 "ABC-family proteins mediated transport"
xref: Reactome:517411 "Transmembrane transport of small molecules"
xref: Reactome:526284 "ABC-family proteins mediated transport"
xref: Reactome:526285 "Transmembrane transport of small molecules"
xref: Reactome:531148 "ABC-family proteins mediated transport"
xref: Reactome:531149 "Transmembrane transport of small molecules"
xref: Reactome:536519 "ABC-family proteins mediated transport"
xref: Reactome:536520 "Transmembrane transport of small molecules"
xref: Reactome:542237 "ABC-family proteins mediated transport"
xref: Reactome:542238 "Transmembrane transport of small molecules"
xref: Reactome:547954 "Transmembrane transport of small molecules"
xref: Reactome:552197 "ABC-family proteins mediated transport"
xref: Reactome:552198 "Transmembrane transport of small molecules"
xref: Reactome:557783 "ABC-family proteins mediated transport"
xref: Reactome:557784 "Transmembrane transport of small molecules"
xref: Reactome:568396 "ABC-family proteins mediated transport"
xref: Reactome:568397 "Transmembrane transport of small molecules"
xref: Reactome:581598 "ABC-family proteins mediated transport"
xref: Reactome:581599 "Transmembrane transport of small molecules"
xref: Reactome:585791 "ABC-family proteins mediated transport"
xref: Reactome:585792 "Transmembrane transport of small molecules"
xref: Reactome:592494 "ABC-family proteins mediated transport"
xref: Reactome:592495 "Transmembrane transport of small molecules"
xref: Reactome:597317 "ABC-family proteins mediated transport"
xref: Reactome:597318 "Transmembrane transport of small molecules"
xref: Reactome:598116 "ABC-family proteins mediated transport"
xref: Reactome:598117 "Transmembrane transport of small molecules"
xref: Reactome:599664 "ABC-family proteins mediated transport"
xref: Reactome:599665 "Transmembrane transport of small molecules"
xref: Reactome:600589 "ABC-family proteins mediated transport"
xref: Reactome:600590 "Transmembrane transport of small molecules"
xref: Reactome:602478 "ABC-family proteins mediated transport"
xref: Reactome:602479 "Transmembrane transport of small molecules"
relationship: part_of GO:0008150 ! biological_process
is_a: GO:0006810 ! transport

[Term]
id: GO:0055086
name: nucleobase, nucleoside and nucleotide metabolic process
namespace: biological_process
def: "The chemical reactions and pathways involving nucleobases, nucleosides and nucleotides." [GOC:vw]
subset: goslim_pombe
subset: gosubset_prok
synonym: "nucleobase, nucleoside and nucleotide metabolism" EXACT []
xref: Reactome:15869 "Metablism of nucleotides"
xref: Reactome:448478 "Metablism of nucleotides"
xref: Reactome:469608 "Metablism of nucleotides"
xref: Reactome:487327 "Metablism of nucleotides"
xref: Reactome:507278 "Metablism of nucleotides"
xref: Reactome:517298 "Metablism of nucleotides"
xref: Reactome:526177 "Metablism of nucleotides"
xref: Reactome:531067 "Metablism of nucleotides"
xref: Reactome:536446 "Metablism of nucleotides"
xref: Reactome:542144 "Metablism of nucleotides"
xref: Reactome:547508 "Metablism of nucleotides"
xref: Reactome:552100 "Metablism of nucleotides"
xref: Reactome:557684 "Metablism of nucleotides"
xref: Reactome:568302 "Metablism of nucleotides"
xref: Reactome:581504 "Metablism of nucleotides"
xref: Reactome:585751 "Metablism of nucleotides"
xref: Reactome:592420 "Metablism of nucleotides"
xref: Reactome:595288 "Metablism of nucleotides"
xref: Reactome:597277 "Metablism of nucleotides"
xref: Reactome:598083 "Metablism of nucleotides"
xref: Reactome:599589 "Metablism of nucleotides"
xref: Reactome:600547 "Metablism of nucleotides"
xref: Reactome:602400 "Metablism of nucleotides"
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0070647
name: protein modification by small protein conjugation or removal
namespace: biological_process
def: "A protein modification process by which one or more moieties of a small protein, such as ubiquitin or a ubiquitin-like protein, are covalently attached to or removed from a target protein." [GOC:mah]
subset: goslim_pombe
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0070882
name: cell wall organization or biogenesis
namespace: biological_process
def: "A cellular process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cell wall." [GOC:mah]
subset: goslim_pombe
subset: gosubset_prok
is_a: GO:0008150 ! biological_process

[Typedef]
id: has_part
name: has_part
namespace: gene_ontology
is_transitive: true

[Typedef]
id: negatively_regulates
name: negatively_regulates
namespace: gene_ontology
is_a: regulates ! regulates

[Typedef]
id: part_of
name: part_of
namespace: gene_ontology
xref: OBO_REL:part_of
is_transitive: true

[Typedef]
id: positively_regulates
name: positively_regulates
namespace: gene_ontology
is_a: regulates ! regulates

[Typedef]
id: regulates
name: regulates
namespace: gene_ontology