format-version: 1.2
date: 15:08:2011 17:04
auto-generated-by: OBO-Edit 2.0
ontology: go
saved-by: kchris
synonymtypedef: systematic_synonym "Systematic synonym" EXACT
subsetdef: goslim_candida "Candida GO slim"
subsetdef: goslim_generic "Generic GO slim"
subsetdef: goslim_pir "PIR GO slim"
subsetdef: goslim_plant "Plant GO slim"
subsetdef: goslim_pombe "Fission yeast GO slim"
subsetdef: goslim_yeast "Yeast GO slim"
subsetdef: gosubset_prok "Prokaryotic GO subset"
subsetdef: high_level_annotation_qc "High-level terms not to be used for direct annotation"
subsetdef: unvetted "unvetted"
remark: cvs version: $Revision: 1.101 $

[Term]
id: GO:0000747
name: conjugation with cellular fusion
namespace: biological_process
alt_id: GO:0007322
alt_id: GO:0007333
alt_id: GO:0030461
alt_id: GO:0030477
def: "A conjugation process that results in the union of cellular and genetic information from compatible mating types. An example of this process is found in Saccharomyces cerevisiae." [GOC:elh]
subset: goslim_pombe
synonym: "cell fusion" RELATED []
synonym: "mating" RELATED []
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0000910
name: cytokinesis
namespace: biological_process
alt_id: GO:0007104
alt_id: GO:0016288
def: "A cellular process resulting in the division of the cytoplasm of a cell and its separation into two daughter cells. Cytokinesis usually occurs after growth, replication, and segregation of cellular components." [GOC:ai]
comment: Note that most eukaryotic gene products involved in canonical cytokinesis during the cell cycle can be annotated to 'cell cycle cytokinesis ; GO:0033205' or its descendants. See also 'cell division ; GO:0051301'. Note that cytokinesis excludes nuclear division; in prokaryotes, there is little difference between cytokinesis and cell division.
subset: goslim_candida
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
xref: Reactome:REACT_101918 ! Mitotic Telophase /Cytokinesis, Mus musculus
xref: Reactome:REACT_108805 ! Mitotic Telophase /Cytokinesis, Dictyostelium discoideum
xref: Reactome:REACT_1932 ! Mitotic Telophase /Cytokinesis, Homo sapiens
xref: Reactome:REACT_30667 ! Mitotic Telophase /Cytokinesis, Schizosaccharomyces pombe
xref: Reactome:REACT_32636 ! Mitotic Telophase /Cytokinesis, Bos taurus
xref: Reactome:REACT_78494 ! Mitotic Telophase /Cytokinesis, Danio rerio
xref: Reactome:REACT_84722 ! Mitotic Telophase /Cytokinesis, Gallus gallus
xref: Reactome:REACT_87726 ! Mitotic Telophase /Cytokinesis, Xenopus tropicalis
xref: Reactome:REACT_92849 ! Mitotic Telophase /Cytokinesis, Taeniopygia guttata
xref: Reactome:REACT_93374 ! Mitotic Telophase /Cytokinesis, Canis familiaris
xref: Reactome:REACT_94382 ! Mitotic Telophase /Cytokinesis, Drosophila melanogaster
xref: Reactome:REACT_98952 ! Mitotic Telophase /Cytokinesis, Rattus norvegicus
xref: Reactome:REACT_99118 ! Mitotic Telophase /Cytokinesis, Caenorhabditis elegans
xref: Wikipedia:Cytokinesis
is_a: GO:0008150 ! biological_process
relationship: part_of GO:0008150 ! biological_process

[Term]
id: GO:0002181
name: cytoplasmic translation
namespace: biological_process
def: "The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein." [GOC:hjd]
subset: goslim_pombe
subset: goslim_yeast
is_a: GO:0008150 ! biological_process
relationship: part_of GO:0008150 ! biological_process
created_by: hjd
creation_date: 2011-06-09T03:11:53Z

[Term]
id: GO:0005575
name: cellular_component
namespace: cellular_component
alt_id: GO:0008372
def: "The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together." [GOC:go_curators]
comment: Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. Note that when this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this.
subset: goslim_candida
subset: goslim_generic
subset: goslim_pir
subset: goslim_plant
subset: goslim_yeast
subset: gosubset_prok
synonym: "cellular component" EXACT []
synonym: "cellular component unknown" NARROW []
xref: NIF_Subcellular:sao1337158144
disjoint_from: GO:0003674 ! molecular_function

[Term]
id: GO:0005975
name: carbohydrate metabolic process
namespace: biological_process
def: "The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule." [GOC:mah, ISBN:0198506732]
subset: goslim_candida
subset: goslim_generic
subset: goslim_pir
subset: goslim_plant
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "carbohydrate metabolism" EXACT []
xref: Reactome:REACT_101193 ! Metabolism of carbohydrates, Sus scrofa
xref: Reactome:REACT_102834 ! Metabolism of carbohydrates, Mus musculus
xref: Reactome:REACT_103806 ! Metabolism of carbohydrates, Mycobacterium tuberculosis
xref: Reactome:REACT_104502 ! Metabolism of carbohydrates, Gallus gallus
xref: Reactome:REACT_105321 ! Metabolism of carbohydrates, Escherichia coli
xref: Reactome:REACT_106046 ! Metabolism of carbohydrates, Drosophila melanogaster
xref: Reactome:REACT_107409 ! Metabolism of carbohydrates, Caenorhabditis elegans
xref: Reactome:REACT_28218 ! Metabolism of carbohydrates, Xenopus tropicalis
xref: Reactome:REACT_32291 ! Metabolism of carbohydrates, Staphylococcus aureus N315
xref: Reactome:REACT_33141 ! Metabolism of carbohydrates, Taeniopygia guttata
xref: Reactome:REACT_33953 ! Metabolism of carbohydrates, Rattus norvegicus
xref: Reactome:REACT_34800 ! Metabolism of carbohydrates, Danio rerio
xref: Reactome:REACT_474 ! Metabolism of carbohydrates, Homo sapiens
xref: Reactome:REACT_77669 ! Metabolism of carbohydrates, Plasmodium falciparum
xref: Reactome:REACT_81945 ! Metabolism of carbohydrates, Schizosaccharomyces pombe
xref: Reactome:REACT_83038 ! Metabolism of carbohydrates, Arabidopsis thaliana
xref: Reactome:REACT_83329 ! Metabolism of carbohydrates, Saccharomyces cerevisiae
xref: Reactome:REACT_88330 ! Metabolism of carbohydrates, Bos taurus
xref: Reactome:REACT_88558 ! Metabolism of carbohydrates, Canis familiaris
xref: Reactome:REACT_96375 ! Metabolism of carbohydrates, Dictyostelium discoideum
xref: Reactome:REACT_98394 ! Metabolism of carbohydrates, Oryza sativa
xref: Wikipedia:Carbohydrate_metabolism
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0006091
name: generation of precursor metabolites and energy
namespace: biological_process
def: "The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances." [GOC:jl]
subset: goslim_candida
subset: goslim_generic
subset: goslim_pir
subset: goslim_plant
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "energy pathways" BROAD []
synonym: "intermediary metabolism" RELATED [GOC:mah]
synonym: "metabolic energy generation" RELATED []
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0006260
name: DNA replication
namespace: biological_process
alt_id: GO:0055133
def: "The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA." [GOC:mah]
comment: See also the biological process terms 'DNA-dependent DNA replication ; GO:0006261' and 'RNA-dependent DNA replication ; GO:0006278'.
subset: goslim_pir
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
xref: Reactome:REACT_100559 ! Activation of ATR in response to replication stress, Mus musculus
xref: Reactome:REACT_101280 ! Activation of claspin, Xenopus tropicalis
xref: Reactome:REACT_101497 ! Activation of claspin, Bos taurus
xref: Reactome:REACT_102679 ! Activation of ATR in response to replication stress, Gallus gallus
xref: Reactome:REACT_103614 ! Stalling of DNA replication fork and RPA binding, Taeniopygia guttata
xref: Reactome:REACT_104547 ! Recruitment and activation of Chk1, Gallus gallus
xref: Reactome:REACT_105292 ! Activation of ATR in response to replication stress, Xenopus tropicalis
xref: Reactome:REACT_105467 ! Loading of claspin onto DNA during replication origin firing, Danio rerio
xref: Reactome:REACT_105835 ! Stalling of DNA replication fork and RPA binding, Gallus gallus
xref: Reactome:REACT_106018 ! Recruitment of Rad17-RFC complex to DNA, Gallus gallus
xref: Reactome:REACT_106104 ! Binding of ATR-ATRIP to the RPA-ssDNA complex, Bos taurus
xref: Reactome:REACT_106382 ! Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Drosophila melanogaster
xref: Reactome:REACT_106434 ! Activation of claspin, Canis familiaris
xref: Reactome:REACT_106732 ! Recruitment and activation of Chk1, Canis familiaris
xref: Reactome:REACT_107075 ! Activation of ATR in response to replication stress, Danio rerio
xref: Reactome:REACT_107423 ! Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Caenorhabditis elegans
xref: Reactome:REACT_108461 ! Recruitment and activation of Chk1, Bos taurus
xref: Reactome:REACT_108634 ! Loading of claspin onto DNA during replication origin firing, Mus musculus
xref: Reactome:REACT_108739 ! Binding of ATR-ATRIP to the RPA-ssDNA complex, Xenopus tropicalis
xref: Reactome:REACT_108768 ! Activation of ATR in response to replication stress, Bos taurus
xref: Reactome:REACT_108929 ! Activation of ATR in response to replication stress, Drosophila melanogaster
xref: Reactome:REACT_109137 ! Stalling of DNA replication fork and RPA binding, Rattus norvegicus
xref: Reactome:REACT_29423 ! Activation of ATR in response to replication stress, Schizosaccharomyces pombe
xref: Reactome:REACT_29444 ! Binding of ATR-ATRIP to the RPA-ssDNA complex, Taeniopygia guttata
xref: Reactome:REACT_29691 ! Activation of ATR in response to replication stress, Rattus norvegicus
xref: Reactome:REACT_29764 ! Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Taeniopygia guttata
xref: Reactome:REACT_30149 ! Activation of claspin, Rattus norvegicus
xref: Reactome:REACT_31024 ! Recruitment of Rad17-RFC complex to DNA, Xenopus tropicalis
xref: Reactome:REACT_31919 ! Loading of claspin onto DNA during replication origin firing, Rattus norvegicus
xref: Reactome:REACT_32546 ! Recruitment of Rad17-RFC complex to DNA, Mus musculus
xref: Reactome:REACT_32932 ! Recruitment and activation of Chk1, Taeniopygia guttata
xref: Reactome:REACT_33874 ! Recruitment and activation of Chk1, Xenopus tropicalis
xref: Reactome:REACT_50018 ! Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Rattus norvegicus
xref: Reactome:REACT_53588 ! Loading of claspin onto DNA during replication origin firing, Canis familiaris
xref: Reactome:REACT_6729 ! Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Homo sapiens
xref: Reactome:REACT_6738 ! Loading of claspin onto DNA during replication origin firing, Homo sapiens
xref: Reactome:REACT_6750 ! Activation of claspin, Homo sapiens
xref: Reactome:REACT_6769 ! Activation of ATR in response to replication stress, Homo sapiens
xref: Reactome:REACT_6798 ! Recruitment of Rad17-RFC complex to DNA, Homo sapiens
xref: Reactome:REACT_6869 ! Recruitment and activation of Chk1, Homo sapiens
xref: Reactome:REACT_6936 ! Stalling of DNA replication fork and RPA binding, Homo sapiens
xref: Reactome:REACT_6939 ! Binding of ATR-ATRIP to the RPA-ssDNA complex, Homo sapiens
xref: Reactome:REACT_77532 ! Stalling of DNA replication fork and RPA binding, Canis familiaris
xref: Reactome:REACT_79188 ! Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Canis familiaris
xref: Reactome:REACT_79450 ! Activation of ATR in response to replication stress, Dictyostelium discoideum
xref: Reactome:REACT_80432 ! Loading of claspin onto DNA during replication origin firing, Taeniopygia guttata
xref: Reactome:REACT_80571 ! Activation of claspin, Mus musculus
xref: Reactome:REACT_80896 ! Recruitment and activation of Chk1, Sus scrofa
xref: Reactome:REACT_80988 ! Loading of claspin onto DNA during replication origin firing, Bos taurus
xref: Reactome:REACT_81803 ! Recruitment of Rad17-RFC complex to DNA, Canis familiaris
xref: Reactome:REACT_83095 ! Recruitment of Rad17-RFC complex to DNA, Danio rerio
xref: Reactome:REACT_84829 ! Binding of ATR-ATRIP to the RPA-ssDNA complex, Danio rerio
xref: Reactome:REACT_85266 ! Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Dictyostelium discoideum
xref: Reactome:REACT_85561 ! Binding of ATR-ATRIP to the RPA-ssDNA complex, Rattus norvegicus
xref: Reactome:REACT_86410 ! Stalling of DNA replication fork and RPA binding, Mus musculus
xref: Reactome:REACT_86739 ! Recruitment and activation of Chk1, Rattus norvegicus
xref: Reactome:REACT_87233 ! Binding of ATR-ATRIP to the RPA-ssDNA complex, Canis familiaris
xref: Reactome:REACT_87449 ! Recruitment of Rad17-RFC complex to DNA, Rattus norvegicus
xref: Reactome:REACT_87590 ! Recruitment of Rad17-RFC complex to DNA, Bos taurus
xref: Reactome:REACT_88085 ! Binding of ATR-ATRIP to the RPA-ssDNA complex, Gallus gallus
xref: Reactome:REACT_88384 ! Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Schizosaccharomyces pombe
xref: Reactome:REACT_88529 ! Activation of claspin, Gallus gallus
xref: Reactome:REACT_89355 ! Activation of claspin, Danio rerio
xref: Reactome:REACT_89439 ! Activation of ATR in response to replication stress, Sus scrofa
xref: Reactome:REACT_89725 ! Loading of claspin onto DNA during replication origin firing, Drosophila melanogaster
xref: Reactome:REACT_90512 ! Stalling of DNA replication fork and RPA binding, Bos taurus
xref: Reactome:REACT_90809 ! Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Danio rerio
xref: Reactome:REACT_90838 ! Recruitment of Rad17-RFC complex to DNA, Taeniopygia guttata
xref: Reactome:REACT_91184 ! Recruitment and activation of Chk1, Danio rerio
xref: Reactome:REACT_91302 ! Activation of ATR in response to replication stress, Canis familiaris
xref: Reactome:REACT_92527 ! Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Mus musculus
xref: Reactome:REACT_92644 ! Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Xenopus tropicalis
xref: Reactome:REACT_92706 ! Stalling of DNA replication fork and RPA binding, Danio rerio
xref: Reactome:REACT_94983 ! Stalling of DNA replication fork and RPA binding, Xenopus tropicalis
xref: Reactome:REACT_95253 ! Activation of ATR in response to replication stress, Taeniopygia guttata
xref: Reactome:REACT_95329 ! Activation of claspin, Taeniopygia guttata
xref: Reactome:REACT_96115 ! Binding of ATR-ATRIP to the RPA-ssDNA complex, Mus musculus
xref: Reactome:REACT_96804 ! Recruitment and activation of Chk1, Mus musculus
xref: Reactome:REACT_96998 ! Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Bos taurus
xref: Reactome:REACT_97204 ! Loading of claspin onto DNA during replication origin firing, Gallus gallus
xref: Reactome:REACT_97726 ! Activation of ATR in response to replication stress, Caenorhabditis elegans
xref: Reactome:REACT_99948 ! Loading of claspin onto DNA during replication origin firing, Xenopus tropicalis
xref: Wikipedia:DNA_replication
relationship: has_part GO:0008150 ! biological_process
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0006281
name: DNA repair
namespace: biological_process
def: "The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway." [PMID:11563486]
subset: goslim_pir
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
xref: Reactome:REACT_102034 ! DNA Repair, Staphylococcus aureus N315
xref: Reactome:REACT_106650 ! DNA Damage Reversal, Taeniopygia guttata
xref: Reactome:REACT_107446 ! DNA Repair, Arabidopsis thaliana
xref: Reactome:REACT_107692 ! DNA Damage Reversal, Gallus gallus
xref: Reactome:REACT_107752 ! DNA Repair, Plasmodium falciparum
xref: Reactome:REACT_108864 ! DNA Damage Reversal, Rattus norvegicus
xref: Reactome:REACT_108881 ! DNA Damage Reversal, Bos taurus
xref: Reactome:REACT_108903 ! DNA Repair, Xenopus tropicalis
xref: Reactome:REACT_109956 ! DNA Repair, Gallus gallus
xref: Reactome:REACT_127 ! DNA Damage Reversal, Homo sapiens
xref: Reactome:REACT_216 ! DNA Repair, Homo sapiens
xref: Reactome:REACT_29531 ! DNA Damage Reversal, Saccharomyces cerevisiae
xref: Reactome:REACT_29636 ! DNA Damage Reversal, Staphylococcus aureus N315
xref: Reactome:REACT_33728 ! DNA Damage Reversal, Sus scrofa
xref: Reactome:REACT_34272 ! DNA Repair, Dictyostelium discoideum
xref: Reactome:REACT_78051 ! DNA Damage Reversal, Canis familiaris
xref: Reactome:REACT_82907 ! DNA Repair, Oryza sativa
xref: Reactome:REACT_83599 ! DNA Repair, Sus scrofa
xref: Reactome:REACT_83608 ! DNA Damage Reversal, Caenorhabditis elegans
xref: Reactome:REACT_83660 ! DNA Repair, Escherichia coli
xref: Reactome:REACT_84835 ! DNA Damage Reversal, Dictyostelium discoideum
xref: Reactome:REACT_85522 ! DNA Repair, Mus musculus
xref: Reactome:REACT_86513 ! DNA Repair, Mycobacterium tuberculosis
xref: Reactome:REACT_86902 ! DNA Repair, Danio rerio
xref: Reactome:REACT_88201 ! DNA Repair, Drosophila melanogaster
xref: Reactome:REACT_88946 ! DNA Damage Reversal, Mycobacterium tuberculosis
xref: Reactome:REACT_89358 ! DNA Damage Reversal, Escherichia coli
xref: Reactome:REACT_89524 ! DNA Damage Reversal, Drosophila melanogaster
xref: Reactome:REACT_90385 ! DNA Repair, Canis familiaris
xref: Reactome:REACT_90952 ! DNA Damage Reversal, Arabidopsis thaliana
xref: Reactome:REACT_91094 ! DNA Repair, Rattus norvegicus
xref: Reactome:REACT_91330 ! DNA Repair, Bos taurus
xref: Reactome:REACT_91442 ! DNA Repair, Caenorhabditis elegans
xref: Reactome:REACT_91576 ! DNA Damage Reversal, Oryza sativa
xref: Reactome:REACT_92707 ! DNA Repair, Taeniopygia guttata
xref: Reactome:REACT_93704 ! DNA Repair, Saccharomyces cerevisiae
xref: Reactome:REACT_94769 ! DNA Repair, Schizosaccharomyces pombe
xref: Reactome:REACT_95158 ! DNA Damage Reversal, Xenopus tropicalis
xref: Reactome:REACT_96452 ! DNA Damage Reversal, Danio rerio
xref: Reactome:REACT_99277 ! DNA Damage Reversal, Mus musculus
xref: Wikipedia:DNA_repair
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0006310
name: DNA recombination
namespace: biological_process
def: "Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction." [ISBN:0198506732]
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0006399
name: tRNA metabolic process
namespace: biological_process
def: "The chemical reactions and pathways involving tRNA, transfer RNA, a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. Transfer RNA is characterized by the presence of many unusual minor bases, the function of which has not been completely established." [ISBN:0198506732]
subset: goslim_generic
subset: goslim_pombe
subset: gosubset_prok
synonym: "tRNA metabolism" EXACT []
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0006457
name: protein folding
namespace: biological_process
alt_id: GO:0007022
alt_id: GO:0007024
alt_id: GO:0007025
def: "The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure." [GOC:go_curators, GOC:rb]
subset: goslim_candida
subset: goslim_generic
subset: goslim_pir
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "alpha-tubulin folding" NARROW [GOC:mah]
synonym: "beta-tubulin folding" NARROW [GOC:mah]
synonym: "chaperone activity" RELATED []
synonym: "chaperonin ATPase activity" RELATED []
synonym: "chaperonin-mediated tubulin folding" NARROW [GOC:mah]
synonym: "co-chaperone activity" RELATED []
synonym: "co-chaperonin activity" RELATED []
synonym: "glycoprotein-specific chaperone activity" RELATED []
synonym: "non-chaperonin molecular chaperone ATPase activity" RELATED []
synonym: "protein complex assembly, multichaperone pathway" RELATED []
xref: Reactome:REACT_100411 ! Chaperonin-mediated protein folding, Arabidopsis thaliana
xref: Reactome:REACT_104912 ! Chaperonin-mediated protein folding, Caenorhabditis elegans
xref: Reactome:REACT_105663 ! Chaperonin-mediated protein folding, Rattus norvegicus
xref: Reactome:REACT_106009 ! Chaperonin-mediated protein folding, Canis familiaris
xref: Reactome:REACT_106427 ! Chaperonin-mediated protein folding, Mus musculus
xref: Reactome:REACT_106894 ! Formation of tubulin folding intermediates by CCT/TriC, Canis familiaris
xref: Reactome:REACT_106927 ! Chaperonin-mediated protein folding, Drosophila melanogaster
xref: Reactome:REACT_107029 ! Formation of tubulin folding intermediates by CCT/TriC, Drosophila melanogaster
xref: Reactome:REACT_108248 ! Chaperonin-mediated protein folding, Gallus gallus
xref: Reactome:REACT_109411 ! Formation of tubulin folding intermediates by CCT/TriC, Bos taurus
xref: Reactome:REACT_110417 ! Formation of tubulin folding intermediates by CCT/TriC, Rattus norvegicus
xref: Reactome:REACT_16956 ! Formation of tubulin folding intermediates by CCT/TriC, Homo sapiens
xref: Reactome:REACT_17001 ! Formation of tubulin folding intermediates by CCT/TriC, Mus musculus
xref: Reactome:REACT_17004 ! Chaperonin-mediated protein folding, Homo sapiens
xref: Reactome:REACT_17056 ! Cooperation of Prefoldin and TriC/CCT in actin and tubulin folding, Bos taurus
xref: Reactome:REACT_23878 ! N-glycan trimming in the ER and Calnexin/Calreticulin cycle, Homo sapiens
xref: Reactome:REACT_30906 ! Chaperonin-mediated protein folding, Oryza sativa
xref: Reactome:REACT_32155 ! Chaperonin-mediated protein folding, Saccharomyces cerevisiae
xref: Reactome:REACT_32255 ! Chaperonin-mediated protein folding, Schizosaccharomyces pombe
xref: Reactome:REACT_33395 ! Formation of tubulin folding intermediates by CCT/TriC, Mus musculus
xref: Reactome:REACT_77627 ! Chaperonin-mediated protein folding, Plasmodium falciparum
xref: Reactome:REACT_77963 ! Formation of tubulin folding intermediates by CCT/TriC, Saccharomyces cerevisiae
xref: Reactome:REACT_78530 ! Formation of tubulin folding intermediates by CCT/TriC, Gallus gallus
xref: Reactome:REACT_81155 ! Formation of tubulin folding intermediates by CCT/TriC, Caenorhabditis elegans
xref: Reactome:REACT_83906 ! Chaperonin-mediated protein folding, Dictyostelium discoideum
xref: Reactome:REACT_85492 ! Formation of tubulin folding intermediates by CCT/TriC, Sus scrofa
xref: Reactome:REACT_85496 ! Formation of tubulin folding intermediates by CCT/TriC, Plasmodium falciparum
xref: Reactome:REACT_86318 ! Formation of tubulin folding intermediates by CCT/TriC, Arabidopsis thaliana
xref: Reactome:REACT_91676 ! Formation of tubulin folding intermediates by CCT/TriC, Schizosaccharomyces pombe
xref: Reactome:REACT_92785 ! Formation of tubulin folding intermediates by CCT/TriC, Dictyostelium discoideum
xref: Reactome:REACT_92961 ! Chaperonin-mediated protein folding, Xenopus tropicalis
xref: Reactome:REACT_92981 ! Chaperonin-mediated protein folding, Taeniopygia guttata
xref: Reactome:REACT_94123 ! Formation of tubulin folding intermediates by CCT/TriC, Taeniopygia guttata
xref: Reactome:REACT_94443 ! Formation of tubulin folding intermediates by CCT/TriC, Danio rerio
xref: Reactome:REACT_94772 ! Chaperonin-mediated protein folding, Sus scrofa
xref: Reactome:REACT_96773 ! Chaperonin-mediated protein folding, Danio rerio
xref: Reactome:REACT_97016 ! Chaperonin-mediated protein folding, Bos taurus
xref: Reactome:REACT_97220 ! Formation of tubulin folding intermediates by CCT/TriC, Xenopus tropicalis
xref: Reactome:REACT_98132 ! Formation of tubulin folding intermediates by CCT/TriC, Oryza sativa
xref: Wikipedia:Protein_folding
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0006461
name: protein complex assembly
namespace: biological_process
def: "The aggregation, arrangement and bonding together of a set of components to form a protein complex." [GOC:ai]
subset: goslim_generic
subset: goslim_pombe
subset: gosubset_prok
synonym: "chaperone activity" RELATED []
synonym: "protein complex formation" EXACT []
is_a: GO:0008150 ! biological_process
relationship: part_of GO:0008150 ! biological_process

[Term]
id: GO:0006486
name: protein glycosylation
namespace: biological_process
def: "A protein modification process that results in the addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins." [GOC:curators]
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "protein amino acid glycosylation" EXACT [GOC:bf]
relationship: part_of GO:0008150 ! biological_process
is_a: GO:0005975 ! carbohydrate metabolic process

[Term]
id: GO:0006520
name: cellular amino acid metabolic process
namespace: biological_process
alt_id: GO:0006519
def: "The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells." [CHEBI:33709, GOC:curators, ISBN:0198506732]
subset: goslim_generic
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "amino acid and derivative metabolism" EXACT [GOC:curators]
synonym: "amino acid metabolic process" EXACT [GOC:curators]
synonym: "cellular amino acid and derivative metabolic process" EXACT []
synonym: "cellular amino acid metabolism" EXACT []
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0006605
name: protein targeting
namespace: biological_process
def: "The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif." [GOC:ma]
subset: goslim_generic
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "nascent polypeptide association" RELATED []
synonym: "protein sorting along secretory pathway" NARROW []
xref: Wikipedia:Protein_targeting
is_a: GO:0008150 ! biological_process
relationship: part_of GO:0008150 ! biological_process
relationship: occurs_in GO:0005575 ! occurs in cellular_component

[Term]
id: GO:0006629
name: lipid metabolic process
namespace: biological_process
def: "The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids." [GOC:ma]
subset: goslim_candida
subset: goslim_generic
subset: goslim_pir
subset: goslim_plant
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "lipid metabolism" EXACT []
xref: Reactome:REACT_104930 ! Lipid digestion, mobilization, and transport, Drosophila melanogaster
xref: Reactome:REACT_107479 ! Lipid digestion, mobilization, and transport, Xenopus tropicalis
xref: Reactome:REACT_108775 ! Lipid digestion, mobilization, and transport, Canis familiaris
xref: Reactome:REACT_28745 ! Lipid digestion, mobilization, and transport, Saccharomyces cerevisiae
xref: Reactome:REACT_31395 ! Lipid digestion, mobilization, and transport, Sus scrofa
xref: Reactome:REACT_32539 ! Lipid digestion, mobilization, and transport, Bos taurus
xref: Reactome:REACT_33836 ! Lipid digestion, mobilization, and transport, Rattus norvegicus
xref: Reactome:REACT_602 ! Lipid digestion, mobilization, and transport, Homo sapiens
xref: Reactome:REACT_77176 ! Lipid digestion, mobilization, and transport, Danio rerio
xref: Reactome:REACT_77191 ! Lipid digestion, mobilization, and transport, Arabidopsis thaliana
xref: Reactome:REACT_79244 ! Lipid digestion, mobilization, and transport, Plasmodium falciparum
xref: Reactome:REACT_81778 ! Lipid digestion, mobilization, and transport, Oryza sativa
xref: Reactome:REACT_82512 ! Lipid digestion, mobilization, and transport, Taeniopygia guttata
xref: Reactome:REACT_82723 ! Lipid digestion, mobilization, and transport, Escherichia coli
xref: Reactome:REACT_90757 ! Lipid digestion, mobilization, and transport, Mus musculus
xref: Reactome:REACT_94607 ! Lipid digestion, mobilization, and transport, Mycobacterium tuberculosis
xref: Reactome:REACT_97906 ! Lipid digestion, mobilization, and transport, Gallus gallus
xref: Reactome:REACT_98052 ! Lipid digestion, mobilization, and transport, Caenorhabditis elegans
xref: Reactome:REACT_98129 ! Lipid digestion, mobilization, and transport, Schizosaccharomyces pombe
xref: Reactome:REACT_99706 ! Lipid digestion, mobilization, and transport, Dictyostelium discoideum
xref: Wikipedia:Lipid_metabolism
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0006766
name: vitamin metabolic process
namespace: biological_process
def: "The chemical reactions and pathways involving vitamins. Vitamin is a general term for a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. Vitamins may be water-soluble or fat-soluble and usually serve as components of coenzyme systems." [GOC:ai]
subset: goslim_candida
subset: goslim_pir
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "vitamin metabolism" EXACT []
xref: Reactome:REACT_101808 ! Metabolism of vitamins and cofactors, Bos taurus
xref: Reactome:REACT_101968 ! Metabolism of vitamins and cofactors, Saccharomyces cerevisiae
xref: Reactome:REACT_103646 ! Metabolism of vitamins and cofactors, Staphylococcus aureus N315
xref: Reactome:REACT_105907 ! Metabolism of vitamins and cofactors, Danio rerio
xref: Reactome:REACT_106152 ! Metabolism of vitamins and cofactors, Xenopus tropicalis
xref: Reactome:REACT_108558 ! Metabolism of vitamins and cofactors, Rattus norvegicus
xref: Reactome:REACT_110948 ! Metabolism of vitamins and cofactors, Sus scrofa
xref: Reactome:REACT_11193 ! Metabolism of vitamins and cofactors, Homo sapiens
xref: Reactome:REACT_30091 ! Metabolism of vitamins and cofactors, Oryza sativa
xref: Reactome:REACT_33738 ! Metabolism of vitamins and cofactors, Mycobacterium tuberculosis
xref: Reactome:REACT_34161 ! Metabolism of vitamins and cofactors, Mus musculus
xref: Reactome:REACT_78899 ! Metabolism of vitamins and cofactors, Caenorhabditis elegans
xref: Reactome:REACT_81509 ! Metabolism of vitamins and cofactors, Gallus gallus
xref: Reactome:REACT_82129 ! Metabolism of vitamins and cofactors, Taeniopygia guttata
xref: Reactome:REACT_83508 ! Metabolism of vitamins and cofactors, Arabidopsis thaliana
xref: Reactome:REACT_87513 ! Metabolism of vitamins and cofactors, Schizosaccharomyces pombe
xref: Reactome:REACT_88850 ! Metabolism of vitamins and cofactors, Dictyostelium discoideum
xref: Reactome:REACT_96278 ! Metabolism of vitamins and cofactors, Plasmodium falciparum
xref: Reactome:REACT_96904 ! Metabolism of vitamins and cofactors, Drosophila melanogaster
xref: Reactome:REACT_97734 ! Metabolism of vitamins and cofactors, Escherichia coli
xref: Reactome:REACT_97893 ! Metabolism of vitamins and cofactors, Canis familiaris
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0006913
name: nucleocytoplasmic transport
namespace: biological_process
alt_id: GO:0000063
def: "The directed movement of molecules between the nucleus and the cytoplasm." [GOC:go_curators]
subset: goslim_generic
subset: goslim_pombe
synonym: "nucleocytoplasmic shuttling" NARROW []
is_a: GO:0008150 ! biological_process
relationship: part_of GO:0008150 ! biological_process
relationship: occurs_in GO:0005575 ! occurs in cellular_component

[Term]
id: GO:0007005
name: mitochondrion organization
namespace: biological_process
def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components." [GOC:dph, GOC:jl, GOC:mah, GOC:sgd_curators, PMID:9786946]
subset: goslim_generic
subset: goslim_pir
subset: goslim_pombe
subset: goslim_yeast
synonym: "mitochondria organization" EXACT [GOC:mah]
synonym: "mitochondrion organisation" EXACT [GOC:mah]
synonym: "mitochondrion organization and biogenesis" RELATED [GOC:curators]
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0007010
name: cytoskeleton organization
namespace: biological_process
def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures." [GOC:dph, GOC:jl, GOC:mah]
subset: goslim_candida
subset: goslim_generic
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "cytoskeletal organization and biogenesis" RELATED [GOC:mah]
synonym: "cytoskeletal regulator activity" RELATED []
synonym: "cytoskeleton organisation" EXACT [GOC:curators]
synonym: "cytoskeleton organization and biogenesis" RELATED [GOC:mah]
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0007031
name: peroxisome organization
namespace: biological_process
def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules." [GOC:mah]
subset: goslim_pir
subset: goslim_pombe
subset: goslim_yeast
synonym: "peroxisome organisation" EXACT [GOC:curators]
synonym: "peroxisome organization and biogenesis" RELATED [GOC:mah]
synonym: "peroxisome-assembly ATPase activity" RELATED []
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0007033
name: vacuole organization
namespace: biological_process
alt_id: GO:0044086
def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vacuole." [GOC:mah]
subset: goslim_pir
subset: goslim_pombe
subset: goslim_yeast
synonym: "vacuolar assembly" NARROW [GOC:mah]
synonym: "vacuole biogenesis" RELATED [GOC:mah]
synonym: "vacuole organisation" EXACT [GOC:curators]
synonym: "vacuole organization and biogenesis" RELATED [GOC:mah]
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0007059
name: chromosome segregation
namespace: biological_process
def: "The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the alignment of chromosomes at the metaphase plate, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles." [GOC:ai, GOC:mah]
subset: goslim_generic
subset: goslim_pir
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "chromosome division" EXACT []
synonym: "chromosome transmission" RELATED []
xref: Wikipedia:Chromosome_segregation
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0007126
name: meiosis
namespace: biological_process
def: "A cell cycle process comprising the steps by which a cell progresses through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations." [GOC:dph, GOC:mah, PMID:9334324]
subset: goslim_pombe
xref: Wikipedia:Meiosis
is_a: GO:0008150 ! biological_process
relationship: part_of GO:0008150 ! biological_process

[Term]
id: GO:0007155
name: cell adhesion
namespace: biological_process
def: "The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules." [GOC:hb, GOC:pf]
subset: goslim_candida
subset: goslim_generic
subset: goslim_pir
subset: goslim_pombe
subset: gosubset_prok
synonym: "cell adhesion molecule activity" RELATED []
xref: Wikipedia:Cell_adhesion
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0007163
name: establishment or maintenance of cell polarity
namespace: biological_process
alt_id: GO:0030012
alt_id: GO:0030467
def: "Any cellular process that results in the specification, formation or maintenance of anisotropic intracellular organization or cell growth patterns." [GOC:mah]
subset: goslim_pombe
synonym: "establishment and/or maintenance of cell polarity" RELATED []
synonym: "establishment and/or maintenance of cell polarization" RELATED []
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0007346
name: regulation of mitotic cell cycle
namespace: biological_process
def: "Any process that modulates the rate or extent of progress through the mitotic cell cycle." [GOC:dph, GOC:go_curators, GOC:tb]
subset: goslim_pombe
synonym: "control of mitotic cell cycle progression" EXACT []
synonym: "mitotic cell cycle control" EXACT []
synonym: "mitotic cell cycle modulation" EXACT []
synonym: "mitotic cell cycle regulation" EXACT []
synonym: "mitotic cell cycle regulator" RELATED []
synonym: "modulation of mitotic cell cycle progression" EXACT []
synonym: "regulation of mitotic cell cycle progression" EXACT []
synonym: "regulation of progression through mitotic cell cycle" EXACT [GOC:tb, GOC:dph]
is_a: GO:0008150 ! biological_process
relationship: regulates GO:0008150 ! biological_process

[Term]
id: GO:0008150
name: biological_process
namespace: biological_process
alt_id: GO:0000004
alt_id: GO:0007582
def: "Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end." [GOC:go_curators, GOC:isa_complete]
comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. Note that when this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this.
subset: goslim_candida
subset: goslim_pir
subset: goslim_plant
subset: goslim_yeast
subset: gosubset_prok
synonym: "biological process" EXACT []
synonym: "biological process unknown" NARROW []
synonym: "physiological process" EXACT []
xref: Wikipedia:Biological_process
disjoint_from: GO:0005575 ! cellular_component

[Term]
id: GO:0016071
name: mRNA metabolic process
namespace: biological_process
def: "The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes." [ISBN:0198506732]
subset: goslim_pombe
subset: gosubset_prok
synonym: "mRNA metabolism" EXACT []
xref: Reactome:REACT_100536 ! Metabolism of mRNA, Dictyostelium discoideum
xref: Reactome:REACT_107604 ! Metabolism of mRNA, Danio rerio
xref: Reactome:REACT_108700 ! Metabolism of mRNA, Rattus norvegicus
xref: Reactome:REACT_109292 ! Metabolism of mRNA, Drosophila melanogaster
xref: Reactome:REACT_109673 ! Metabolism of mRNA, Canis familiaris
xref: Reactome:REACT_109919 ! Metabolism of mRNA, Gallus gallus
xref: Reactome:REACT_20605 ! Metabolism of mRNA, Homo sapiens
xref: Reactome:REACT_28293 ! Metabolism of mRNA, Sus scrofa
xref: Reactome:REACT_29287 ! Metabolism of mRNA, Xenopus tropicalis
xref: Reactome:REACT_31547 ! Metabolism of mRNA, Plasmodium falciparum
xref: Reactome:REACT_32511 ! Metabolism of mRNA, Arabidopsis thaliana
xref: Reactome:REACT_33798 ! Metabolism of mRNA, Bos taurus
xref: Reactome:REACT_33846 ! Metabolism of mRNA, Mus musculus
xref: Reactome:REACT_34551 ! Metabolism of mRNA, Oryza sativa
xref: Reactome:REACT_78090 ! Metabolism of mRNA, Caenorhabditis elegans
xref: Reactome:REACT_84825 ! Metabolism of mRNA, Taeniopygia guttata
xref: Reactome:REACT_87161 ! Metabolism of mRNA, Schizosaccharomyces pombe
xref: Reactome:REACT_98319 ! Metabolism of mRNA, Saccharomyces cerevisiae
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0016192
name: vesicle-mediated transport
namespace: biological_process
alt_id: GO:0006899
def: "A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane." [GOC:ai, GOC:mah, ISBN:08789310662000]
subset: goslim_candida
subset: goslim_generic
subset: goslim_pir
subset: goslim_pombe
subset: gosubset_prok
synonym: "nonselective vesicle transport" NARROW []
synonym: "protein sorting along secretory pathway" RELATED []
synonym: "vesicle trafficking" RELATED []
synonym: "vesicle transport" EXACT []
synonym: "vesicular transport" EXACT [GOC:mah]
is_a: GO:0008150 ! biological_process
relationship: part_of GO:0008150 ! biological_process

[Term]
id: GO:0016568
name: chromatin modification
namespace: biological_process
def: "The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure." [GOC:mah]
subset: goslim_pombe
is_a: GO:0051276 ! chromosome organization

[Term]
id: GO:0023052
name: signaling
namespace: biological_process
alt_id: GO:0023046
def: "The entirety of a process in which information is transmitted. This process begins with an active signal and ends when a cellular response has been triggered." [GOC:mtg_signal, GOC:mtg_signaling_feb11, GOC:signaling]
comment: Note that a signal is any variable property or parameter that serves to convey information, and may be a physical entity such as a gene product or small molecule, a photon, or a change in state such as movement or voltage change.
subset: goslim_pombe
subset: goslim_yeast
synonym: "signaling process" EXACT []
synonym: "signalling" EXACT []
synonym: "signalling process" RELATED [GOC:mah]
is_a: GO:0008150 ! biological_process
creation_date: 2010-02-16T09:30:50Z

[Term]
id: GO:0030163
name: protein catabolic process
namespace: biological_process
def: "The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds." [GOC:mah]
comment: This term refers to the breakdown of mature proteins. For cleavage events involved in generating a mature protein from a precursor, consider instead the term 'protein maturation ; GO:0051604' and its children.
subset: goslim_candida
subset: goslim_pombe
subset: gosubset_prok
synonym: "pheromone catabolic process" RELATED []
synonym: "pheromone catabolism" RELATED []
synonym: "protein breakdown" EXACT []
synonym: "protein catabolism" EXACT []
synonym: "protein degradation" EXACT []
xref: Wikipedia:Protein_catabolism
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0030437
name: ascospore formation
namespace: biological_process
alt_id: GO:0007151
def: "The process in which cells that are products of meiosis acquire the specialized features of ascospores. Ascospores are generally found in clusters of four or eight spores within a single mother cell, the ascus, and are characteristic of the ascomycete fungi (phylum Ascomycota)." [GOC:mah, PMID:16339736]
subset: goslim_pombe
synonym: "ascospore biosynthesis" EXACT []
synonym: "spore formation" BROAD []
synonym: "sporulation" BROAD []
relationship: part_of GO:0008150 ! biological_process
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0042254
name: ribosome biogenesis
namespace: biological_process
alt_id: GO:0007046
def: "A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis." [GOC:ma]
subset: goslim_candida
subset: goslim_generic
subset: goslim_pir
subset: goslim_pombe
subset: gosubset_prok
synonym: "ribosomal chaperone activity" RELATED []
synonym: "ribosome biogenesis and assembly" EXACT []
xref: Wikipedia:Ribosome_biogenesis
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0051186
name: cofactor metabolic process
namespace: biological_process
def: "The chemical reactions and pathways involving a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate." [GOC:ai]
subset: goslim_generic
subset: goslim_pir
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "cofactor metabolism" EXACT []
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0051276
name: chromosome organization
namespace: biological_process
alt_id: GO:0007001
alt_id: GO:0051277
def: "A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information." [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
subset: goslim_generic
subset: goslim_pir
subset: goslim_pombe
subset: gosubset_prok
synonym: "chromosome organisation" EXACT []
synonym: "chromosome organization and biogenesis" RELATED [GOC:mah]
synonym: "maintenance of genome integrity" RELATED []
synonym: "nuclear genome maintenance" RELATED []
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0051604
name: protein maturation
namespace: biological_process
def: "Any process leading to the attainment of the full functional capacity of a protein." [GOC:ai]
subset: goslim_generic
subset: goslim_pir
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
is_a: GO:0008150 ! biological_process
relationship: part_of GO:0008150 ! biological_process

[Term]
id: GO:0055085
name: transmembrane transport
namespace: biological_process
def: "The process in which a solute is transported from one side of a membrane to the other." [GOC:dph, GOC:jid]
subset: goslim_generic
subset: goslim_pombe
subset: goslim_yeast
xref: Reactome:REACT_100480 ! SLC-mediated transmembrane transport, Taeniopygia guttata
xref: Reactome:REACT_101577 ! SLC-mediated transmembrane transport, Caenorhabditis elegans
xref: Reactome:REACT_101877 ! SLC-mediated transmembrane transport, Escherichia coli
xref: Reactome:REACT_102348 ! Transmembrane transport of small molecules, Staphylococcus aureus N315
xref: Reactome:REACT_102897 ! Transmembrane transport of small molecules, Caenorhabditis elegans
xref: Reactome:REACT_102974 ! SLC-mediated transmembrane transport, Canis familiaris
xref: Reactome:REACT_104555 ! SLC-mediated transmembrane transport, Xenopus tropicalis
xref: Reactome:REACT_108243 ! SLC-mediated transmembrane transport, Staphylococcus aureus N315
xref: Reactome:REACT_109832 ! Transmembrane transport of small molecules, Plasmodium falciparum
xref: Reactome:REACT_110770 ! ABC-family proteins mediated transport, Mus musculus
xref: Reactome:REACT_15480 ! ABC-family proteins mediated transport, Homo sapiens
xref: Reactome:REACT_15518 ! Transmembrane transport of small molecules, Homo sapiens
xref: Reactome:REACT_19118 ! SLC-mediated transmembrane transport, Homo sapiens
xref: Reactome:REACT_28801 ! Transmembrane transport of small molecules, Sus scrofa
xref: Reactome:REACT_29093 ! ABC-family proteins mediated transport, Taeniopygia guttata
xref: Reactome:REACT_29184 ! SLC-mediated transmembrane transport, Gallus gallus
xref: Reactome:REACT_29635 ! Transmembrane transport of small molecules, Canis familiaris
xref: Reactome:REACT_30969 ! ABC-family proteins mediated transport, Canis familiaris
xref: Reactome:REACT_32055 ! Transmembrane transport of small molecules, Saccharomyces cerevisiae
xref: Reactome:REACT_32223 ! Transmembrane transport of small molecules, Rattus norvegicus
xref: Reactome:REACT_32423 ! SLC-mediated transmembrane transport, Bos taurus
xref: Reactome:REACT_32562 ! SLC-mediated transmembrane transport, Sus scrofa
xref: Reactome:REACT_32713 ! ABC-family proteins mediated transport, Sus scrofa
xref: Reactome:REACT_33571 ! SLC-mediated transmembrane transport, Danio rerio
xref: Reactome:REACT_61245 ! Transmembrane transport of small molecules, Bos taurus
xref: Reactome:REACT_79086 ! SLC-mediated transmembrane transport, Plasmodium falciparum
xref: Reactome:REACT_79921 ! SLC-mediated transmembrane transport, Saccharomyces cerevisiae
xref: Reactome:REACT_80022 ! ABC-family proteins mediated transport, Bos taurus
xref: Reactome:REACT_80510 ! ABC-family proteins mediated transport, Rattus norvegicus
xref: Reactome:REACT_80848 ! ABC-family proteins mediated transport, Schizosaccharomyces pombe
xref: Reactome:REACT_80977 ! ABC-family proteins mediated transport, Caenorhabditis elegans
xref: Reactome:REACT_81024 ! Transmembrane transport of small molecules, Oryza sativa
xref: Reactome:REACT_81153 ! SLC-mediated transmembrane transport, Mus musculus
xref: Reactome:REACT_82725 ! SLC-mediated transmembrane transport, Rattus norvegicus
xref: Reactome:REACT_83770 ! Transmembrane transport of small molecules, Escherichia coli
xref: Reactome:REACT_86135 ! ABC-family proteins mediated transport, Oryza sativa
xref: Reactome:REACT_86409 ! Transmembrane transport of small molecules, Drosophila melanogaster
xref: Reactome:REACT_86576 ! Transmembrane transport of small molecules, Schizosaccharomyces pombe
xref: Reactome:REACT_87124 ! SLC-mediated transmembrane transport, Oryza sativa
xref: Reactome:REACT_88059 ! ABC-family proteins mediated transport, Xenopus tropicalis
xref: Reactome:REACT_88521 ! Transmembrane transport of small molecules, Taeniopygia guttata
xref: Reactome:REACT_88894 ! Transmembrane transport of small molecules, Gallus gallus
xref: Reactome:REACT_89376 ! SLC-mediated transmembrane transport, Schizosaccharomyces pombe
xref: Reactome:REACT_91272 ! ABC-family proteins mediated transport, Arabidopsis thaliana
xref: Reactome:REACT_91803 ! SLC-mediated transmembrane transport, Mycobacterium tuberculosis
xref: Reactome:REACT_92006 ! Transmembrane transport of small molecules, Mycobacterium tuberculosis
xref: Reactome:REACT_92624 ! ABC-family proteins mediated transport, Gallus gallus
xref: Reactome:REACT_93747 ! Transmembrane transport of small molecules, Dictyostelium discoideum
xref: Reactome:REACT_94160 ! Transmembrane transport of small molecules, Mus musculus
xref: Reactome:REACT_94393 ! ABC-family proteins mediated transport, Drosophila melanogaster
xref: Reactome:REACT_94944 ! ABC-family proteins mediated transport, Danio rerio
xref: Reactome:REACT_94972 ! SLC-mediated transmembrane transport, Dictyostelium discoideum
xref: Reactome:REACT_96636 ! SLC-mediated transmembrane transport, Arabidopsis thaliana
xref: Reactome:REACT_97365 ! Transmembrane transport of small molecules, Arabidopsis thaliana
xref: Reactome:REACT_97867 ! ABC-family proteins mediated transport, Saccharomyces cerevisiae
xref: Reactome:REACT_98509 ! Transmembrane transport of small molecules, Xenopus tropicalis
xref: Reactome:REACT_98716 ! SLC-mediated transmembrane transport, Drosophila melanogaster
xref: Reactome:REACT_99579 ! Transmembrane transport of small molecules, Danio rerio
xref: Reactome:REACT_99829 ! ABC-family proteins mediated transport, Dictyostelium discoideum
relationship: part_of GO:0008150 ! biological_process
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0055086
name: nucleobase, nucleoside and nucleotide metabolic process
namespace: biological_process
def: "The cellular chemical reactions and pathways involving nucleobases, nucleosides and nucleotides." [GOC:vw]
subset: goslim_pombe
subset: goslim_yeast
subset: gosubset_prok
synonym: "nucleobase, nucleoside and nucleotide metabolism" EXACT []
xref: Reactome:REACT_100770 ! Metabolism of nucleotides, Plasmodium falciparum
xref: Reactome:REACT_105851 ! Metabolism of nucleotides, Schizosaccharomyces pombe
xref: Reactome:REACT_107755 ! Metabolism of nucleotides, Mycobacterium tuberculosis
xref: Reactome:REACT_107894 ! Metabolism of nucleotides, Rattus norvegicus
xref: Reactome:REACT_1698 ! Metabolism of nucleotides, Homo sapiens
xref: Reactome:REACT_28046 ! Metabolism of nucleotides, Drosophila melanogaster
xref: Reactome:REACT_29205 ! Metabolism of nucleotides, Dictyostelium discoideum
xref: Reactome:REACT_29767 ! Metabolism of nucleotides, Saccharomyces cerevisiae
xref: Reactome:REACT_33967 ! Metabolism of nucleotides, Mus musculus
xref: Reactome:REACT_77113 ! Metabolism of nucleotides, Taeniopygia guttata
xref: Reactome:REACT_78257 ! Metabolism of nucleotides, Staphylococcus aureus N315
xref: Reactome:REACT_82673 ! Metabolism of nucleotides, Caenorhabditis elegans
xref: Reactome:REACT_82902 ! Metabolism of nucleotides, Canis familiaris
xref: Reactome:REACT_82978 ! Metabolism of nucleotides, Escherichia coli
xref: Reactome:REACT_83845 ! Metabolism of nucleotides, Bos taurus
xref: Reactome:REACT_86759 ! Metabolism of nucleotides, Oryza sativa
xref: Reactome:REACT_90371 ! Metabolism of nucleotides, Sus scrofa
xref: Reactome:REACT_90903 ! Metabolism of nucleotides, Gallus gallus
xref: Reactome:REACT_96600 ! Metabolism of nucleotides, Danio rerio
xref: Reactome:REACT_97332 ! Metabolism of nucleotides, Arabidopsis thaliana
xref: Reactome:REACT_99343 ! Metabolism of nucleotides, Xenopus tropicalis
is_a: GO:0008150 ! biological_process

[Term]
id: GO:0070647
name: protein modification by small protein conjugation or removal
namespace: biological_process
def: "A protein modification process in which one or more groups of a small protein, such as ubiquitin or a ubiquitin-like protein, are covalently attached to or removed from a target protein." [GOC:mah]
subset: goslim_pombe
subset: goslim_yeast
is_a: GO:0008150 ! biological_process
created_by: midori
creation_date: 2009-05-11T02:54:03Z

[Term]
id: GO:0070882
name: cellular cell wall organization or biogenesis
namespace: biological_process
def: "A cellular process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cell wall." [GOC:mah]
subset: goslim_pombe
subset: gosubset_prok
synonym: "cell wall organization or biogenesis at cellular level" EXACT [GOC:mah]
synonym: "cellular cell wall organisation or biogenesis" EXACT [GOC:mah]
is_a: GO:0008150 ! biological_process
created_by: midori
creation_date: 2009-08-24T03:08:05Z

[Term]
id: GO:0071941
name: nitrogen cycle metabolic process
namespace: biological_process
def: "A nitrogen compound metabolic process that contributes to the nitrogen cycle. The nitrogen cycle is a series of metabolic pathways by which nitrogen is converted between various forms and redox states; it encompasses pathways in which nitrogen is acted upon directly, such as nitrification, denitrification, nitrogen fixation, and mineralization." [GOC:mah, PMID:16675690, Wikipedia:Nitrogen_cycle]
subset: goslim_generic
subset: goslim_pombe
xref: Wikipedia:Nitrogen_cycle
is_a: GO:0008150 ! biological_process
created_by: midori
creation_date: 2010-09-30T05:21:03Z

[Typedef]
id: has_part
name: has_part
namespace: gene_ontology
xref: OBO_REL:has_part
is_transitive: true
created_by: midori
creation_date: 2009-07-30T12:00:35Z

[Typedef]
id: negatively_regulates
name: negatively_regulates
namespace: gene_ontology

[Typedef]
id: occurs_in
name: occurs in
namespace: gene_ontology
xref: BFO:0000066

[Typedef]
id: part_of
name: part_of
namespace: gene_ontology
xref: OBO_REL:part_of
is_transitive: true

[Typedef]
id: positively_regulates
name: positively_regulates
namespace: gene_ontology

[Typedef]
id: regulates
name: regulates
namespace: gene_ontology