Current Annotations

Annotation Details and Downloads

The gene association files submitted by GO Consortium members are shown in the tables below. Files are in the GO annotation file format and are compressed using the UNIX gzip utility. Please see the appropriate README file for further details on the annotation set. Any errors or omissions in annotations should be reported by writing to the GO helpdesk.

Ontology and annotation data is integrated in the mySQL and XML files. See the GO database guide for more information.

These files can also be downloaded via FTP; we recommend this method for the larger files, such as the UniProt dataset, as the web-based download may not work correctly.

Filtered Files

These files are taxon-specific and reflect the work of specific projects, primarily the model organisms database groups, to provide comprehensive, non-redundant annotation files for their organism. All the files in this table have been filtered using the annotation file QC checks script. A major component to the filtering is the requirement that particular taxon IDs can only be included within the association files provided by specific projects; please see the list of the authoritative groups for the major model organisms.

Statistics as of February 10, 2012

Filtered Annotation File Downloads
Species, Database Gene Products Annotated Annotations Submission date MM/DD/YYYY Download filtered files
Species, Database Gene Products Annotated Annotations Submission date MM/DD/YYYY Download filtered files
Agrobacterium tumefaciensstr. C58
PAMGO		 82 248
(248 non-IEA)		 12/31/2010
Arabidopsis thaliana
TAIR		 29559 147225
(115036 non-IEA)		 2/7/2012
Aspergillus nidulans
AspGD		 43075 167685
(67419 non-IEA)		 2/5/2012
Comprehensive Microbial Resource [multispecies]
JCVI		 61691 154709
(154709 non-IEA)		 10/28/2011
Bos taurus
GO Annotations @ EBI		 21504 131421
(10709 non-IEA)		 2/8/2012
Caenorhabditis elegans
WormBase		 16913 107736
(58842 non-IEA)		 11/25/2011
Candida albicans
CGD		 11815 65401
(20586 non-IEA)		 2/5/2012
Canis lupus familiaris
GO Annotations @ EBI		 17586 67755
(3160 non-IEA)		 2/8/2012
Danio rerio
ZFIN		 15755 121603
(29223 non-IEA)		 2/7/2012
Dickeya dadantii
PAMGO		 124 296
(296 non-IEA)		 5/20/2011
Dictyostelium discoideum
dictyBase		 5436 20769
(20769 non-IEA)		 2/5/2012
Drosophila melanogaster
FlyBase		 13190 82762
(68278 non-IEA)		 1/24/2012
Escherichia coli
EcoCyc & EcoliHub		 2200 9083
(9083 non-IEA)		 1/13/2012
Gallus gallus
GO Annotations @ EBI		 15881 106825
(5537 non-IEA)		 2/8/2012
Homo sapiens
GO Annotations @ EBI		 41863 359518
(161718 non-IEA)		 2/8/2012
Leishmania major
Sanger GeneDB		 10 27
(27 non-IEA)		 8/12/2011
Magnaporthe grisea
PAMGO		 11274 27628
(27628 non-IEA)		 10/28/2011
Mus musculus
MGI		 25112 272232
(178853 non-IEA)		 1/25/2012
Oomycetes
PAMGO		 30 126
(126 non-IEA)		 5/31/2010
Oryza sativa
Gramene		 41142 49322
(49322 non-IEA)		 10/28/2011
Protein Data Bank [multispecies]
GO Annotations @ EBI		 101808 940216
(34438 non-IEA)		 2/8/2012
Plasmodium falciparum
Sanger GeneDB		 2198 4606
(4606 non-IEA)		 5/20/2011
Pseudomonas aeruginosa PAO1
PseudoCAP		 1519 6902
(6902 non-IEA)		 10/28/2011
Rattus norvegicus
RGD		 24459 257271
(142857 non-IEA)		 2/4/2012
Reactome [multispecies]
CSHL & EBI		 534 13863
(13863 non-IEA)		 12/27/2011
Saccharomyces cerevisiae
SGD
Stanford University		 6359 87924
(44824 non-IEA)		 2/4/2012
Schizosaccharomyces pombe
PomBase
University of Cambridge, UK		 5291 36865
(33350 non-IEA)		 11/29/2011
Solanaceae
SGN		 148 269
(269 non-IEA)		 5/20/2011
Sus scrofa
GO Annotations @ EBI		 14974 93573
(3718 non-IEA)		 2/8/2012
Trypanosoma brucei
Sanger GeneDB		 2977 10299
(10299 non-IEA)		 10/28/2011
UniProt [multispecies]
IEA annotations have been removed
GO Annotations @ EBI		 19645 90488
(90488 non-IEA)		 2/10/2012

Unfiltered Files

These files have not been filtered with the annotation file QC checks script. The most important difference between these files and the filtered files above is that gene products from certain taxa are not stripped out of the file; they may also contain annotations to obsolete terms or outdated IEA annotations. Please see the annotation file QC script documentation for full details of the checks performed.

Please note that if you use unfiltered files in conjunction with filtered files, there may be duplicated annotations.

Statistics as of February 10, 2012

Unfiltered Annotation File Downloads
Species, Database Gene Products Annotated Annotations Submission date MM/DD/YYYY Download unfiltered files
Species, Database Gene Products Annotated Annotations Submission date MM/DD/YYYY Download unfiltered files
Protein Data Bank [multispecies]
GO Annotations @ EBI		 173167 2249362
(546456 non-IEA)		 2/8/2012
Reactome [multispecies]
CSHL & EBI		 11451 88230
(88230 non-IEA)		 12/27/2011
UniProt [multispecies]
GO Annotations @ EBI		 13361200 114738016
(934310 non-IEA)		 2/8/2012
Arabidopsis thaliana
GO Annotations @ EBI		 27146 131008
(57595 non-IEA)		 2/8/2012
Danio rerio
GO Annotations @ EBI		 27480 101587
(13563 non-IEA)		 2/8/2012
Mus musculus
GO Annotations @ EBI		 43920 382759
(227098 non-IEA)		 2/8/2012
Rattus norvegicus
GO Annotations @ EBI		 27401 199210
(54888 non-IEA)		 2/8/2012
Canis lupus familiaris
GO Annotations @ EBI		 17586 67755
(3160 non-IEA)		 2/8/2012
Sus scrofa
GO Annotations @ EBI		 14974 93574
(3719 non-IEA)		 2/8/2012

In the tables above gene association counts are provided for all evidence codes and separately for everything except IEA, Inferred from Electronic Annotation. The IEA code means there has been no human involvement in the assignment of the association; see the GO evidence code documentation for more details.

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gp2protein files

The gp2protein directory contains files that map between model organism database object IDs and UniProt accessions.

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